2024-11-01 12:42:50, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_017353247 1220 bp mRNA linear VRT 15-JUN-2017 DEFINITION PREDICTED: Danio rerio claudin-1-like (LOC101883865), transcript variant X2, mRNA. ACCESSION XM_017353247 VERSION XM_017353247.2 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_018395352.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_017353247.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1220 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="22" /map="unlocalized" gene 1..1220 /gene="LOC101883865" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:101883865" CDS 604..1050 /gene="LOC101883865" /codon_start=1 /product="claudin-1-like" /protein_id="XP_017208736.2" /db_xref="GeneID:101883865" /translation="
MHVFLYVCCVLVVVEIRMSRVFMIISIVLSSFAVLVAVSGLRCTKFLDDNETMKDRTAFFGGILSVCGGLFALGITSWFTYLIVDDFYQKDDDKDKYVIGKSLIGAFVASLLCLFGGVFLCTCSVKSLRSNNKFSQHLVSKNPEKDYV"
misc_feature <649..963 /gene="LOC101883865" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN
ttcaacccaaccattctatattcagaataaataattcatggatccatccggcccatgaatgatttacacatctactttaccctaaataataataggaatcaaaccaataacctactgtttcaacccccaacactttgttgttaagctcaaactagatatttccagatcagagttactaattctattgaaatatgacccaatgtccagtccatgaatgattcacacctacttcagatgataaatagcagcctgcaatgctcagtttgcattggtgagcctcagtggacaaacactactgaccgaaacatttacttctcgttgtttgattattttactcaaacatgggttttcaactctttggttatattttgaccatcgctggattatgtggcctgcttataggcacatttacgaatgaatggaaaatcagcggacacgacaatgacaagtctgtgattctggtgaaatatgaaggactgtggatgcagtgttcagtcgacagttcgtcgcatgttcgatgcaccaattttaattctctccttcatcaaacttgtaagtatcagtcatttactgtatggatgaaacagacattcggtttcttatatgcatgtcttcttatatgtgtgctgtgtgcttgttgtagttgaaattcggatgagtcgagtattcatgatcatcagcatcgtgttgtcaagctttgctgttctggtagctgtttctggactcagatgcacaaaatttttagacgacaatgagacgatgaaggacagaactgccttctttggaggaatcctctctgtgtgtggtggtctatttgctttgggaataaccagctggttcacttatttaattgtcgatgatttctaccagaaggacgatgacaaggataagtatgttatcggcaaatctctgattggtgcgtttgtcgcatctttgctttgtttattcggaggtgtgtttttatgcacctgcagcgtgaagagtctgagatccaacaataagttcagccagcacctggtctccaaaaatcctgaaaaagactacgtttaatgctcctgagatgatctgaatgactaaaccttaatttgaacatcacacactggttagggattataaatatacatgaattgtaatagacagataagtataaatgtatgttgcattgtgctgatatgacctaatgttctgatgtgttttgtgtgtgtgtgtgtgtgtgtgtg
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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