2024-11-01 14:34:15, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_005159456 8017 bp mRNA linear VRT 08-SEP-2024 DEFINITION PREDICTED: Danio rerio argonaute RISC catalytic component 3b (ago3b), transcript variant X1, mRNA. ACCESSION XM_005159456 VERSION XM_005159456.4 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007130.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2024 this sequence version replaced XM_005159456.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_000002035.6-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/15/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8017 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="19" gene 1..8017 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="argonaute RISC catalytic component 3b; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 282 long SRA reads, 12 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns" /db_xref="GeneID:568159" /db_xref="ZFIN:ZDB-GENE-060503-452" misc_feature 1 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 496..3099 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /codon_start=1 /product="protein argonaute-3 isoform X1" /protein_id="XP_005159513.1" /db_xref="GeneID:568159" /db_xref="ZFIN:ZDB-GENE-060503-452" /translation="
MEIGTTGAVGAAPQFSVPRRPGYGTMGKPIKLLANCFQVDIPKMDVYLYDVDIKPEKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKKSLYTAQPLPVASAGVDLDVTLPGEGGKDRIFKVTIKFVSLVSWHMLHEVLTGRSTPDPLELDKPISTNPVHAVDVVLRHLPSMRYTPVGRSFFSSPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYNSDPFVQEFQFRVRDEMAEVTGRVLPAPMLQYGGRVSSEHFMNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEVLKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADNVEPMFRHLKNTYAGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTHYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKEYQPGITYIVVQKRHHTRLFCADRAERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYYVLWDDNCFTADEFQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTLRTMYFA"
misc_feature 712..996 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1024..1176 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1177..1539 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1333..1335,1378..1380,1420..1422,1432..1434, 1486..1488,1507..1509,1513..1515) /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1672..2970 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2104..2106,2116..2118,2152..2163,2170..2172, 2194..2196,2203..2205,2215..2217,2227..2229) /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2308..2310,2314..2316,2524..2526,2938..2940) /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="active site" /db_xref="CDD:240015" polyA_site 8017 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ggtaacacaccgatacttgatcagacgtcaacggccgcaagcgaactcgacaggaataaaagacacacgttttgactcggcgagggatgtgaagatataaacttcaaatctgagcgcatgtctttaaaatataagagcttgtcactttaaaagacacaccgcgaacgcttcgaggctcctgacaaactctgtttcgcgatggctgttagaaatatttccttcggagtcttttggcttgtcagctggtagcaattacggctctacggcatacggcgggagccacggctgaaggtcggtgctttttgcttgactgattcgctacgggctgtgtgaagctcagaacctccgagcggcccgtttcaatacccgcggtagaagccggtgtgtgtgtcggtcgttcggtttacagtggacattcagcggctttacacgaacaccgctcatctggtatttgatcccccgaagccggctagaatccggacagagacctcatgaatggaaatcggaactacaggagccgttggggctgcgccccagttctccgtacctcggaggcctggctatggcaccatggggaagcccatcaagctgctggccaactgctttcaggtggacatccccaagatggatgtctacctgtacgatgtggacatcaagccagaaaagtgcccacgacgtgttaacagggaagtggtggattctatggtgcagcactttaaagtgacaatctttggggacagaagaccagtttatgatggcaagaagagcctttacactgctcagcctttaccagtggcctcagcgggggtggacctggacgtgaccttgccaggtgaaggtgggaaggacaggattttcaaggtaaccattaaatttgtgtcgctggtcagttggcacatgctgcatgaggtcctcactggacggagcactcctgatcctctggagcttgacaagccaatcagcaccaatcccgtacacgccgtagatgttgtcctgcgccatctgccatcaatgaggtacacccctgtgggaaggtcgtttttctcctcccctgagggctatgatcacccactgggcggggggagggaggtgtggtttggcttccaccaatcagtgcgaccggctatgtggaagatgatgctcaacattgatgtgtctgccactgctttctacaaagctcagcctgtgattcagttcatgtgtgaggttcttgatatccacaacatcgatgagcagccccgtcctctcaccgattcccacagagtcaaattcaccaaagagatcaaaggtttaaaggtggaggtcacccactgtggcaccatgaggaggaagtacagggtgtgtaatgttactcgtcgaccagctagccatcagacgtttcctctacagctagaaaatggacagactgtggagagaacagtggcacaatatttcagggaaaagtacaacttacagctcaagtacccccatttgccctgcctgcaagtgggacaggagcagaaacacacatacctacctttagaggtgtgcaacatagtggcaggtcaacgctgcataaaaaaactgaccgacaaccaaacctccaccatgatcaaagccacggcccgctccgcaccggacagacaagaggagatcagcagactggtgcgcagtgccaactataattcagacccatttgtgcaagagttccagttccgtgtgcgggacgagatggcggaggtgacgggtcgagttctgcccgcccccatgctgcagtacggcggcagggtgagctctgaacactttatgaatcgtactgtagccacccctagtcatggagtgtgggacatgagaggcaagcagtttcacactggagtggagatcaagatgtgggccatcgcttgctttgccactcagagacaatgtagagaggaagttctcaagggctttacagaccagctgcggaagatctccaaggatgcagggatgcctattcaggggcagccgtgcttctgcaagtatgctcagggagcagataatgtggagcccatgttccggcacctgaagaacacttatgctggtcttcaactcatcatcgtcattctgcctggaaaaactccagtctacgccgaagtgaaacgtgttggagacactcttctgggaatggccactcagtgcgttcaggtgaagaatgtggtaaagacgtctcctcagaccctttccaacctctgtttgaagatcaacgtcaaactgggcggcattaacaacatcctagtgccccatcagcggccttctgttttccagcagccagtcatatttctgggagctgatgtcactcatccgcctgcaggagatggcaagaaaccctccattgcagctgtggtgggtagcatggatgctcaccccagcagatactgcgctaccgtccgtgtccagaggcccagacaggaggtgattcaggacctggcatccatggtgcgagagctgctcatccagttctacaagtctactcactacaaacccaccagaatcatcttctatagggatggagtgtctgaggggcagttcagacaggtgctgtattatgagctcctggccatacgtgaagcttgtatcagccttgagaaggaatatcagcctggaatcacctacatcgttgtgcagaaacgtcaccacactcgccttttctgtgctgaccgtgctgagagggttggccgcagtgggaacattccagcaggaaccacagtggacaccgacatcacccatccatacgaatttgacttttatctgtgcagtcatgctggaatacagggtacaagccgaccttcacactactacgtgctatgggacgacaactgcttcacagctgatgagttccagctcttgacgtaccagctgtgccacacatacgtgcgctgcactcgctccgtctccatccctgcaccagcctactatgctcatctggtggccttcagagcccgttatcatttagtggataaagagcatgacagtgcggaaggcagccatgtgtcgggtcagagtaacggtcgagaccctcaagccctggccaaagctgtgcagatccatcacgacactctgaggaccatgtactttgcctagcaccgcctccacagacctgtcaatcaccagtcattgtgcacttagaggaggagggagaggagcttctcccaatcacaggctgctaaagagaaccaaatgtaatagaacttacaggcggaactagcacagttatgcaatagaaaaacagccaatctttccaagcttactaattgtttttaatatctagattgcagctataatgttatttattagatttctagatctgtttaactattcattttgcagccttgggtcacaaaaccaagtttaaagatgaggcagatcagcgaatgaggcagtgttatttccctgtttgtgtaggtttctctcatcctgtagagtttcacgactcatcggacacgcaaaaagctgaacagttttaaaaaacgtctgcttaggattagtgttttaataacttcgaaaacggatgttgaagaaatgccactagagggcagtgcaaattttgctaacagtttgcaattgtactgtaggtcctccattgttcctccggatagttgatcaagtcttgatcttttactttttaaaaaaattatttttaccatcaaaatccaatatttcagtttatatatatatatatatatatagtagacaactgaaatagcattccattttcacacttcacaaacatgcttcctggtttaggaaattgtagatatttggactaaaacaagtagggaagaaaggaacttactttttttagtccaactatctacaaattcttaaacatagaagcattatctagatgtgtaaaaagtatcagaaataatgtcaaaattaagtgagattttcaaaattaagcgaaaagtaaaataatttgctaatggggtaagaaaaataatcttactttaaaccaaaaactaaattagtttactttgagacatttttggggcaaaaacccacttattttgactaatttctgcaaacaaattatttttacttgtctagaaaatgcttcttgatttaaaaaatgtttagatattatgtcacactgcacaaaaatgttttttttttcacgtttttcgtataaatatctactaattcttaaaccaagaagcattttctagacgtataaaaagtatctgaaataatgtcaaaattaagtgagattttcaaaattaagtataaagtaaaataatctgctaatgggtttagtaaagtaatcttatttcaaaccgtaaacaaaattattttactttgagacatttttttgggcaaaaaaaaaaaaacagatttttgactaatttctgcgaacaaataatttttacttttctagaaaatgcttcttgagttaaggatctttatatatttagactagaaccaaaacaaagaaaagcatttttcctcatatttactcactgcgaccatgcttattccgctttttgaacatttggagaccctgcttttcttctaattccagtcttttaaatgcttctgaatacctctatgatgcattaagtttctaatccaattgcgcccatcatagtaccgtcggtttcttacagttccggtcacattaagcagacatgacaggttagctaagggctgcagaatttgcagaggagagaccatgcaaaatttccatgtagacgactatgtttatgtatgtgcgttaaacgcattgtgcctcattcagtttgcgtgtgcccacaacataagtgctcgagtgagtgtcagattgaccgtaacaccctcaacggaagtgtgcacacacacaattccacccaaggctactcagagtctcgagttttcattcaattgacatcaattgacatttcattgacctttatgtactttgagcttatttataatactgcttttaacttgcgttgtcattagtgcatctgtaaattatctatttaccttatcgatttcttaatttcatgttttagccctgtgaactttgacaaacactgtcccataagccttttagtgcaataagccaattattaacggctctgtcgtagactttcacgacacaatacaaagcatacctgctttaatttaaaacagaacattttgttgaatgtggcattgttttggagaacttgaacgccattttttggctggttttattgaaacggatgatgtgttttatggctggaatgatgggttaagtttacagaggacgtggtttgtagtaaatgctatcaagacaaaactttcatttaaaaagtcaaatgatgaagtgcctgttttataggagatatctattggcgtacattttaaatgtgtatttaaggcgaatggcgtgtacatatggttggacagatattttagctattaaaactgttattctttttaggtctttttgttgtcaagggcaatttgattagttgaactaatgtagtcctgggccattttcttttcaactttcattcagacttctagatttcttttgaacttttacattttcttttcaactttggaacattcagttttgttttattttttattttgaagattttgtcaaacgttcctttattcttttttcaaaatttccaactgttttcatcattcaaatgtttatttgacgtttcaaacattcttttgaactaagttttcataagatcctgtgagtgttctaacattctgtttttacacacgttccttagaactttaaatagtcagttgatcctttgagctttcaaacatcgtttttgcaaacaaaatttacaaacattttgaacttttgacttttcacattatttttggaaactttaaatgttgttcttaactttttaaacccccctcaaaacccttcccttttcatagcccctgcatattcaacttgcattccacacagaccaaaccaatgtgcctaggaaaacaggggtagtagagagtactgagtaaaagcatatgaagtgtagtgctaaagatggagggcttttactttcacatagcccttaatgtgaatggcactgaggtctttatgacataaagccacaaatattgatcagtgtagctgctgctttacatgataaaaaaaaactacatctgctttcatctctgaagagagcgagaaaatagtttttttctgaaaaatgactgacgaatatattgctgcacttaaacaaaacgctgtacagtctcagatctggtgaaatatgcctaaggtgctaagatggtgtggtgctgtaatacgggggatgttaaccacgctaatctgctgcgaatttactgcaaagctttcagattgtacgagtttttattgaattgagtgtttcgcctggtgaaaaacgttttctttttttcagagtgttagcttgctaaccgaacaaacatgctgaacatattcgagcagtttaaataaacgaaatagcagttttatcgagttaaccagaacttcactctgtaaaaagtgcgctaatgtttggtgctctaattgttttcctctctattttgtttggatgcgttttgaactgttacttctctgccgctaccagcatttgaatttacttgaatatggggagggatcagtagaacctgcgcgcatatgcatttttgacttttagatgaccgctgaaatacagcctcctgaaatcgccacggaataaaaagctagctataaaactcctataggaggagcactgcatgagggggaggggctattctggttagtgggtgtgttttaaatggctcctcccactaaaactgtgacactctcttcacccctttggcttcaagctggtatgcggtttaccttaaagcgtgtttaattcaacgagaagtatatttgtatatttataggtaactgcgtaatgcacgtcgattatttttgctaacaaagtctatgagagtttaagcgacaaattaacgttaatcatgattaatataaatcgggctaatattatgcaatagactgttgagtagtagattcgtctcgtcttgtgtttttctgtggtattgatgagaagttattcagtcgtcgtctaattcgattgtttgattgccttaaagggatagcaactacaaaaatgaagcccaaattaaacacgaaggtacctcctcgaatatttcaatttcttttattattggttgtctaattttttttttttttgagaggcgaagattcatccagtgccttttcggatggtgctgttcttagaccgataaaataaaacgttaacgaaatatgaagtttattaacacgatatactgtataatatgtgttcaagagtgttaaaactgtgtgtgtgggtgtgattgtgcctctttattcgccaagaacacattaattcacagagcttgccagttacagggtctctggaccaaactttctacaagggatatttggcactaatagatcaagcactgttttccttttattattctcactcatttttaacagccagtgtcaaatcaaatcccatatactctataaaatagcaataatataatccgtaatgtcactaatatttgagctggattccagtttgagtcttggttttttttcatggatccttctgttacatttttaacctgtgatttttacgaatctgtgattaaacccagtaccagcttttgtaaaactatgcaagtttcttctcgtcttgaaggagcttcatggaattgttcacagtcggcactctttccattgtgacgcaacacatgttcagcgctctgatgtaattctttagttgatggcgtgatgaaatcttaatgaattaataacagaactgtctataggcgtgtatgtatacatatttgtcccttttattttatctgaacctgattgtggtctttcatttggggctttttatttggtcgttctattaaattgtcgatattttcattaaaactgtatgtctgcagacttgtatgacggttatgtctattgaactgtttgtcttggacagaaacattacacgtgaaataaatattgaatgtgcgtgaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]