LOCUS       NM_199667               3444 bp    mRNA    linear   VRT 08-OCT-2023
DEFINITION  Danio rerio C1GALT1-specific chaperone 1 (c1galt1c1), mRNA.
ACCESSION   NM_199667 XM_005173244
VERSION     NM_199667.3
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 3444)
  AUTHORS   Lescat L, Veron V, Mourot B, Peron S, Chenais N, Dias K,
            Riera-Heredia N, Beaumatin F, Pinel K, Priault M, Panserat S, Salin
            B, Guiguen Y, Bobe J, Herpin A and Seiliez I.
  TITLE     Chaperone-Mediated Autophagy in the Light of Evolution: Insight
            from Fish
  JOURNAL   Mol Biol Evol 37 (10), 2887-2899 (2020)
   PUBMED   32437540
REFERENCE   2  (bases 1 to 3444)
  AUTHORS   Collery RF and Link BA.
  TITLE     Precise Short Sequence Insertion in Zebrafish Using a CRISPR/Cas9
            Approach to Generate a Constitutively Soluble Lrp2 Protein
  JOURNAL   Front Cell Dev Biol 7, 167 (2019)
   PUBMED   31457013
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3444)
  AUTHORS   Bayes A, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A,
            Choudhary JS, Emes RD and Grant SG.
  TITLE     Evolution of complexity in the zebrafish synapse proteome
  JOURNAL   Nat Commun 8, 14613 (2017)
   PUBMED   28252024
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 3444)
  AUTHORS   Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M,
            Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD,
            Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov
            GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and
            Hertzano R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 3444)
  AUTHORS   Woods IG, Wilson C, Friedlander B, Chang P, Reyes DK, Nix R, Kelly
            PD, Chu F, Postlethwait JH and Talbot WS.
  TITLE     The zebrafish gene map defines ancestral vertebrate chromosomes
  JOURNAL   Genome Res 15 (9), 1307-1314 (2005)
   PUBMED   16109975
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX004980.8, EH540118.1 and EH530693.1.
            
            On or before May 28, 2015 this sequence version replaced
            XM_005173244.2, NM_199667.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: GDQH01007030.1, GDQQ01016793.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2168446, SAMEA2168447
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-51                BX004980.8         83568-83618
            52-824              EH540118.1         40-812
            825-1402            EH530693.1         1-578               c
            1403-3444           BX004980.8         87069-89110
FEATURES             Location/Qualifiers
     source          1..3444
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="14"
                     /map="14"
     gene            1..3444
                     /gene="c1galt1c1"
                     /gene_synonym="fc59b02; wu:fc17f08; wu:fc59b02; zgc:66375"
                     /note="C1GALT1-specific chaperone 1"
                     /db_xref="GeneID:324052"
                     /db_xref="ZFIN:ZDB-GENE-030131-2772"
     exon            1..223
                     /gene="c1galt1c1"
                     /gene_synonym="fc59b02; wu:fc17f08; wu:fc59b02; zgc:66375"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    115..117
                     /gene="c1galt1c1"
                     /gene_synonym="fc59b02; wu:fc17f08; wu:fc59b02; zgc:66375"
                     /note="upstream in-frame stop codon"
     exon            224..3444
                     /gene="c1galt1c1"
                     /gene_synonym="fc59b02; wu:fc17f08; wu:fc59b02; zgc:66375"
                     /inference="alignment:Splign:2.1.0"
     CDS             241..1194
                     /gene="c1galt1c1"
                     /gene_synonym="fc59b02; wu:fc17f08; wu:fc59b02; zgc:66375"
                     /codon_start=1
                     /product="C1GALT1-specific chaperone 1"
                     /protein_id="NP_955961.2"
                     /db_xref="GeneID:324052"
                     /db_xref="ZFIN:ZDB-GENE-030131-2772"
                     /translation="

MMSEGSSFMKGMIFGGIFCLIMSFFETFNPGTHSEGHNHLHHHLKPVSKDELQKLSESQMSEFAMQVRVYCLIMVTPKLLVHWATANDTWSKHCDKSVFYTSEASKALDAVDLQEQDEWTRLRKAIQHAYENAGDLHWFFIARPTTFAIIENLKYLVLDKDPSQPFYIGHTEKSGELDYVEYDSGIVLSYEAMRRLMEVFKDEDKCPERGRALWKMSEEKQLATCLKYSGVFAENGEDAQGKGLFNKKSVSSLISDSISQNPGDVVEACCSDMAITFAGMSPSQIQVLMYGVYRLRPYGHDFHDSLTFLPPKDSDND"

ORIGIN      

ggggaattaaacatccgcttaaacatccgtgttctaagatcctgtaacactggactgtaaccagttttcttacaacacatcatgccaataaatgtgaagcaaaacaggttgagctgactccagaacagattctatatttgttcgttgttttccggttgtgtatacggaactaagtgcgacggtgcagcgtctaaatgcgatcactattcttcgtcgttaaaaggacgactccattctagcatgatgtctgagggcagttcatttatgaaaggcatgatcttcggaggaatattctgcttgatcatgtctttctttgagacctttaatccaggaacccactcagaaggtcacaatcacctccaccatcatttgaaacctgtcagcaaagatgagctacagaagttatcagagtctcagatgtctgagttcgctatgcaggttcgagtctactgcctcatcatggttactccaaagcttttagttcactgggcgacagctaacgacacctggagcaaacactgcgacaaatctgtgttttacacctctgaggcgtctaaagctctagatgcggttgacctacaggagcaggacgagtggacaaggcttcgcaaagccatccaacacgcttatgagaacgccggagacctgcactggtttttcatagcgcgacccaccacctttgctattatagagaatctcaaatacctggtgttggataaagatccaagccagccgttttacattggccacacggaaaagtctggagagctggattatgtggagtacgacagtgggattgtgttgagttatgaagcgatgaggaggctgatggaggtgtttaaagatgaagataaatgtccagagcgaggacgagctctatggaagatgtctgaagaaaagcaactggccacttgtctgaagtacagcggagtgtttgctgaaaacggagaggacgcccaaggcaaagggctttttaacaagaagagtgtgagctctttgatttcggatagcatcagccaaaatccgggcgatgtggtggaggcctgttgttctgacatggctatcacatttgctgggatgtcgccgagtcagatacaggtcttgatgtacggcgtctacagacttcgaccgtacggacacgactttcacgattccttgacatttctgcctccgaaagactctgataatgattgagggagtttgtggattctggaactcttactgtgactctcagcagtgaaatgttgatcataattgggtgcgggatgaattatttgtgaagttggtgaaggtaaaaatgaaaaggatttgcattatgatttaatactaataagtcaagtgctggatcatgtgtgtgcacttgtcagtattttgaataaaaatgctagattcacatttatggatcagatctgtgtaaatctgcggcaagatttatagttcctgctgttttcagaagtcggtaaagtagctgctttcatgccaagtcaaaactgtcatttctggatgatgttcacgtgagataacacattttagacgtgtgattattttacaatttcacaagttgcagtaattagaaccgggcatgaatgcatttacttctaccactgtaaaaccattaattaaaaagaaaagagaatgtatattttatatcaggggtgtcaaaatcagagtttagttcgagccctgctcaaacacatactggtggttgtaaaataatcctgaaagacttgattagctggatttggtgcgtttaaataaggttgaaactaaactctgcaaggatttggccctccagcaactgagagggacacatttttactgttcatttacatgacaatgttttttggggggcatgaaaaagctaattattttaattggatttaaagtgcaacttttggcaaaaacaattgtgaaaacagtggcatcatggactttatggatattataattccggtttcaagccgctactcatttgaattgagaaaatatttgtttatgacattttttagtcaaatcacacattaaagtgaattttatataaaagcaaagtggacacaacagtctctgggcttgctgcatcacaaataccaaaattttaacaatttctaaaaaaaaaaattataatttttttttggccatctgatattaggcaaggacataaatgtttattattaccatttgagcctctccatacagtttgatatagcgcttggacccggaagccgcttggtgtgacgtcacacttaacaagcatataggcatgtttcagtacttcacaaccaaaactattggggacagggttgccacatccaagaaaagttttcagcctgatgacaacttagaacctaccacatcaccatctactggcatggcatgtgggctggaatgatttcattggtatctgacaaacaaaaggaaaacattccttttttaactacattattaaactgtctatttaataattttgtccaggtgttttcaatattccttaaaggtacagtatgttacttctggttcacagttactaggtaaattgacagcagagaatattccagttgtaaacacttatcaaaaggcacatcccagcaattctggatgaaataaatatatgctttggaaggtgaaattatgggtgtcactgtggtgcagtgggtagcacaatcgcctcacagcaaaaaggtcgctggttcgagccttggctaggccagttggcatttctgtgtggagtttgcatgttctccccccgtgttggcgtgggtttcatccggatgctctggtttccccacaagtccagacatgcggtacaggtgaattgggtaagctaaattgtccgtagtgtatgtgtgtgaatgagtttgtgtggatgtttcccagtgatgggttgcagctggaagggcatccgttgtgtaaaaaacatatgctggataagttgagggtttattccgctgtggcgaccccaggttaataaagggactgtgccaaaaaaagaaaatgaatgaatataggtaaaatcatgagttgctcattaaatatggttcattttaagcttaaaagactacaaaccttttttcttttttacgtgggacagctagggatgaaaatgaagaatgtttttatgatttttaaaattgttttcttggttgtaaaatgtcaaataagaactggaatttattttctctgtctgtatcatcattaacagtatctgaagaaaatgtggtgtaaaagtgtgattcaaaaatgcttgaaataacttttgaatgaataaactatttatttacatatcaaaatagtgtttctataatttagatgtattatacactggtttgtgatttttacattctatttagtaaccatcaggacactggttctccttaagtctttccataatactcgttcatattaaaaaaaatttttttgcagtgaataaagaatacattcataaaa

//