LOCUS       NM_001313687            6108 bp    mRNA    linear   VRT 06-JUL-2017
DEFINITION  Danio rerio nucleoporin 205 (nup205), mRNA.
ACCESSION   NM_001313687 XM_009293478
VERSION     NM_001313687.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 6108)
  AUTHORS   Amsterdam A, Nissen RM, Sun Z, Swindell EC, Farrington S and
            Hopkins N.
  TITLE     Identification of 315 genes essential for early zebrafish
            development
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 101 (35), 12792-12797 (2004)
   PUBMED   15256591
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX005474.6, CR450784.5, DR718726.1 and CN507068.1.
            
            On Aug 25, 2015 this sequence version replaced XM_009293478.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript from the same
            strain was available for the full length of the gene. The extent of
            this transcript is supported by transcript alignments and
            orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed/partial sample support SAMEA2168446,
                              SAMEA2168447 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-46                BX005474.6         102559-102604
            47-189              CR450784.5         1159-1301
            190-361             CR450784.5         3509-3680
            362-506             CR450784.5         3791-3935
            507-666             CR450784.5         4944-5103
            667-895             CR450784.5         5182-5410
            896-1060            CR450784.5         7785-7949
            1061-1236           CR450784.5         8027-8202
            1237-1353           CR450784.5         9001-9117
            1354-1491           CR450784.5         9268-9405
            1492-1642           CR450784.5         11662-11812
            1643-1851           CR450784.5         11916-12124
            1852-2034           CR450784.5         12525-12707
            2035-2085           CR450784.5         12865-12915
            2086-2295           CR450784.5         14276-14485
            2296-2533           CR450784.5         14861-15098
            2534-2723           CR450784.5         17888-18077
            2724-2844           CR450784.5         18153-18273
            2845-2923           CR450784.5         18355-18433
            2924-3088           CR450784.5         18509-18673
            3089-3213           CR450784.5         18874-18998
            3214-3328           CR450784.5         19895-20009
            3329-3478           CR450784.5         21207-21356
            3479-3553           CR450784.5         21441-21515
            3554-3711           CR450784.5         22339-22496
            3712-3792           CR450784.5         23498-23578
            3793-3984           CR450784.5         23668-23859
            3985-4189           CR450784.5         24490-24694
            4190-4288           CR450784.5         24803-24901
            4289-4434           CR450784.5         25801-25946
            4435-4623           CR450784.5         26037-26225
            4624-5297           DR718726.1         1-674
            5298-5690           CN507068.1         370-762
            5691-5719           CR450784.5         31230-31258
            5720-5778           CR450784.5         31340-31398
            5779-6108           CR450784.5         32939-33268
FEATURES             Location/Qualifiers
     source          1..6108
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="18"
                     /map="18"
     gene            1..6108
                     /gene="nup205"
                     /gene_synonym="zgc:111802"
                     /note="nucleoporin 205"
                     /db_xref="GeneID:445382"
                     /db_xref="ZFIN:ZDB-GENE-040715-8"
     CDS             19..5931
                     /gene="nup205"
                     /gene_synonym="zgc:111802"
                     /note="nucleoporin 205kDa"
                     /codon_start=1
                     /product="nuclear pore complex protein Nup205"
                     /protein_id="NP_001300616.1"
                     /db_xref="GeneID:445382"
                     /db_xref="ZFIN:ZDB-GENE-040715-8"
                     /translation="

MATQMAVNSGASLWGPLKELWEAVEGAIWRRQPESVHLLDLQLKKHKPYFLNLFKNPPKSAEQREKVRKASTEGIAIQGQQGARLLPEQLISEAFILSDLFDLGELAALELLLAGEHQQPHFPGLTRGLVAVLLYWDGKRCVANSLRSLIQSRHGKTFTLDLSPELVNLTTRFTDELMAQGLTKQILNLVSDVSVTREFERLQKERGLGNEKHRKEVSDLIKECRQSLAECLFAWACQSPLGKDDTLALIGHLEMVTAEADGSLDSVNLALVMALLYSLDVSFLEQGTEDREDLLQALPLLTEKQYVAAVHSRLVEGQGWKLPGLQAVVQLAWALSLRALSQLPQGAALVEFTEADEALADQALLGGVFLFLTEGVLGSDGFSQEEFYTRRLHSLITDFLALMPMKVKQLRNRADEDARLIHMALQMGSEPPSSLRKDLDHLMILIGEFYSKDPFELELALEFWCPSESLQHTSLTGSFLGVPLQRPPHKQVVLSKFVRQMGDLLPATLYIPYLRMLKGLANGPQCSHYCFSLLKTNGAPHGENRQAGVSGSLVSWEHFFHSLMLYHENLRRDVPSADSTQYRHLPIRGITQRELEGLTAFLQLLTTIITWSENARLALCEHPQWTPVVVMLGLLQCSVQPVLKAQVLHVLAAFGKSPEIAASLWQSLEYTQILQTVKIPGQRQAAGIEVELNEIESSCEEYPLTRAFCHLISTLVESALPVNLGAGLRAPGFQPYLDFLRDSVFLAFPTRAYRRSAEKWEVAEAVLEVFHKLLREYEPQPSDFLPEMVELQGEQVPAHKPPGHSLMFHLLNDSPTLSLCLNLLEEGARQLDTYAQFPGKKQLESAVLHCLCLLELALQKEVTFMDLLRESQTSLLVSPLEQLLQGVSAQSRKADHITNIARYLYHSSSNPDAAFQSAKILRRITRYPNIQARLVGDFTHDQAVSERLMAGFVECLDSEEAQEGVTTNDSDSEKRVARIRHETKIHILNLLITSLELTGPNLGLYLLGYEVKKPVSSTNLQDPGVLGCPRSCLHAILSLLQRGSDSRSGPGLIKQAPQLAELCYQVIYQLCACPDTSGPTMRYLRTSQDFLFSHLQHLPFVLSENEIAALSQMSWLMKTTAIELRVTSLNRQRSHTQRLLNLLLDDQPHTLHTADGETGMEEENRSVSGFLQFGTVSKVRRRLLSVLDAIDFSQEAPELLQLDFFERTQIEQVITNCEHVNEQGHTVCNVKLLHRVLVAEINALQGMAAIGQRPLLMEEVNSVLQQVVERNRVRRSLSAKRHALQSWRSLVETILTACPSELIPADQRQLIIRDLLLDLHDKVLSEDAAGELMPIVAGAVFTLTAHLSQSVLSEQQGVGPEGGSGSGFASIANSALHLILRKLLDFILCTGGGFQRLRAHLYGALLYYLQIAQKPEEPETLQTGTSMWERLTAPEDCFSKLQRENLSIIESYGTALMEVVCRDACDGHEIGRMLALAVLDRVLSIDRQCQWLVYLCNSGYLRVLVESLKQDDVSLQTLLTPQPPLLKPLYIYESKMALLTRVAKTAQGAMELLRCGLVAQLVECQVFHMLPQNDALRVFGQRDPSGFIPSPLERYRQILLPTLRLMQVILTSTTAQHQQGAAQVLQWLIVHSDVIQSILHGQDMSMGSLQELSLLTAIISKTALPGALEMGQEINSAALMELQGHIGRFQRQSLSLLVRLVGTDRARYLKQIEDTVSPSNLAEKREEMEVAMQQICANIMEYCQTLLLQSSSEAQFSLCLFSPSASEPADVSIPSARVPSLGLVLLLLKNSASDFFRYHDSHRQSLNKLERVEQLPPEELKELCQGLVSGSGGVEKISSVQRNVLAKRRLVQLVNNRAKLLALCSYIIETCLFVIWRHLEFYLLYCTPTDPKDSLLPGYRDPAGSRGLSVSRVSQQDLEQLQSDMSSSFSEPLQRKLLEVEGLYSKSRSRHTFIQALTRRIRGLVHHAKS"

     misc_feature    511..5007
                     /gene="nup205"
                     /gene_synonym="zgc:111802"
                     /note="Nuclear pore complex scaffold, nucleoporins
                     186/192/205; Region: Nup192; pfam11894"
                     /db_xref="CDD:463387"
ORIGIN      

cccactcacgcttcagacatggcgacgcagatggcggtaaattcaggagccagtctgtgggggccgctgaaggagctctgggaggctgtggaaggggccatttggagacgtcaaccagaaagtgttcatcttttagatctgcagttgaagaaacacaaaccctacttcctcaacctctttaaaaacccaccgaagagtgcagaacagagagagaaggttcggaaagccagtacagaaggcattgctatccagggtcagcagggagcacgactactacctgagcagctcatctctgaagccttcatccttagtgacctttttgaccttggagaactagccgccctcgagctgctgctggcaggagagcatcagcagcctcatttccccggcctgacccgaggcctggtagctgtgctcctttactgggatggtaaacgctgcgtggccaactctctccgctcacttatccagtccagacatgggaagactttcactcttgacttgagtcctgaattggtgaatctcaccacacggttcacagatgagctgatggcccagggtttgaccaagcaaatactgaacctggtctctgacgtcagcgtgacccgtgagtttgagaggctgcagaaagagcgtggccttggcaatgagaaacacaggaaagaggtatctgacctcattaaagagtgccgacagtctctggcagagtgtttgtttgcgtgggcatgccagtcaccgctaggcaaagatgacacgctggctcttattgggcatttagagatggtgaccgctgaagctgatggctctttggatagtgtcaaccttgctttggtcatggcattgctctattccctggatgttagttttctggagcaaggaacagaagatagagaagacctgctccaggctttgcctctgttgacggagaaacagtacgtggcagccgtgcacagtcggctggttgagggtcaaggctggaagcttccaggactgcaggcagtggtgcagctggcctgggcgctgtctctgagggccctttcacaacttccacagggtgcagctttagtggagttcacagaagcagatgaggctctggcggaccaggcactgttgggaggcgtcttcctctttctgacggagggcgtcctgggaagtgatggtttcagccaagaagaattttacactcggcggctgcattctctgattactgatttcctggcactcatgccaatgaaggtgaaacagttgcgcaaccgtgccgatgaagatgctcgtctgatccacatggctctgcagatgggcagcgagccgccatcatctcttcgcaaggacctggaccacctcatgatccttattggagaattttacagcaaagatccatttgaacttgagctggctttagagttttggtgtccatcagagtctcttcagcacacttcactcactggatcttttcttggagtacctctccaaagacccccacataaacaggtggttctctccaagtttgtgcgtcagatgggtgatctgcttcctgcgactctttacatcccatacctgcgaatgctgaaaggacttgcaaatggccctcagtgctcccactactgcttcagtctgcttaaaactaacggcgctccacacggagagaaccggcaggctggagtgtcaggcagtcttgtgtcatgggaacactttttccactcgctcatgctgtaccatgaaaacctgcgacgagacgtgcccagtgccgacagcacacaataccgtcatctaccaatcagaggcatcactcagagagagctggaaggtctcactgcattcctccagctgctcaccacgatcatcacctggagtgagaatgcacgtctggctctttgtgagcaccctcagtggacccctgtggtggtgatgctgggtttgctacagtgtagtgttcagcccgtcctcaaagctcaagtccttcatgttctcgctgcttttggcaaatctcctgagattgcagcctccctctggcagtctctagagtacacacagatcctacaaacagtgaaaatccctggtcagagacaggctgctgggatcgaggtggagctgaatgagattgaatcgagctgtgaggagtatccactcacacgggccttttgtcatctgatcagtactctggtggagagcgcacttccagtcaatcttggagcaggactgcgagctcccggcttccaaccttatcttgacttcctgcgtgactctgtgtttctggccttccccacgcgagcctaccgtcgctcagcagaaaagtgggaggtagctgaagcagtgctagaggtttttcacaaacttctgcgagaatatgagccccagccttcagacttcctgccggagatggtggaacttcaaggagagcaggtgccggcccataagcccccggggcacagcctgatgttccaccttttgaacgactcacccaccctctctctctgcctcaacctactggaggagggcgcccgccagcttgacacatacgctcaattccctggcaagaagcagttagagtctgcagttctgcactgtctgtgtttgctggagctagccctgcagaaggaggtgacgttcatggatctgctgagagaaagtcaaacatcacttcttgtgtctcctttggagcagctcctgcagggcgtcagtgctcagagcagaaaggcagatcacatcaccaacattgctaggtacctgtatcacagcagctccaatcctgatgctgcgttccagagtgcaaagatcctgcgacggatcactcgctacccaaacatccaggccagactggttggagacttcactcatgatcaggcagtgagtgagaggttgatggccggctttgtggagtgtctggacagtgaagaggctcaggaaggagtgaccacaaatgattcagactctgagaaacgggtggccagaattcgtcatgagaccaagatccacatcttgaatcttttgatcacgtccctggagctaacaggccccaatctgggcctgtatctgcttggctatgaagtcaagaagccagtttcctccactaaccttcaagacccaggtgttcttggctgtccgcggagctgcctgcatgcgattctcagtctgcttcagaggggcagtgactctcgctctggacctgggctcattaaacaggctcctcaactagctgaactctgctaccaggtgatttatcagctgtgcgcatgtcctgacacctctggcccaaccatgagatacctcaggaccagtcaggacttcctgttctctcatctgcaacacctacctttcgttttatcagaaaatgagatcgcggctctgtctcagatgtcctggctaatgaaaaccacagcaatcgagctccgagtgacctcactgaaccgccagcgctcacacacacagagactcctgaacctcctcctcgatgaccagccacacacattacacacagcagatggagagaccggcatggaggaggagaacagatcagtcagtggttttctgcagtttggcaccgtctccaaggtgcgcaggaggctgctcagtgttttggatgccatagatttcagtcaggaggcaccagagcttctgcagctggacttctttgagcgcactcagatcgagcaggtcatcactaactgtgaacatgtcaacgagcagggacacaccgtctgcaatgtcaagttgctgcatcgagttttagttgcagagatcaatgcactacagggcatggcagccatcgggcaaagaccactgctaatggaggaggtgaattcagtcctgcagcaggtggtggagaggaatcgcgtgcggcgcagtctcagtgccaagcgtcatgctctgcagagctggaggagtctggtggagaccatcctcaccgcctgtccttcagaactcatccctgcagaccagcggcagctcatcatcagagatctgctgcttgacctgcatgacaaggtgttatcagaagatgctgctggtgaactgatgccaatcgtagccggagcagtcttcacattaacagcacaccttagccaatcagtgctctctgaacagcagggggtggggccagagggtggctctggatcaggatttgcatccattgctaactccgcccttcacctcatcctgaggaagctgctggactttatcttgtgcacaggtggaggctttcagcgtctcagggctcatttgtatggagctctgctgtactacctgcagatcgcccagaaacctgaggagccagagacactgcagacaggcacatccatgtgggagcgtttgactgcccctgaagattgcttctccaagctacagagagaaaacctgtccatcatcgagagctatggcactgcgctaatggaagtggtgtgcagagacgcttgtgatggccatgagatcggccgaatgctggctctggccgtgttagacagggtgttgtctatagacaggcagtgtcagtggctggtgtacttgtgtaacagtggttacctgcgtgtgctggtggagagtttaaagcaggatgacgtttctttgcaaactcttctcacgcctcagccgccgctgcttaaaccgttgtacatctacgagtccaaaatggctctgctgacccgcgtggccaagaccgctcagggtgcgatggagctgctgcgctgtggtctggtcgctcagctggtggagtgtcaggtgtttcacatgctccctcagaatgacgcgctcagagtgtttgggcagagagatccttcagggtttattcctagtcctctggagcgatacaggcagatcctgcttcctacactcagactgatgcaggtcatcttgacctccaccaccgcacagcaccagcagggggcagcacaggtgctccagtggcttatcgttcattcggatgtcattcagtctattctgcatggtcaggacatgagcatgggctctttacaggaactgtctctgctcactgccatcatcagcaagacggcactgccaggagcacttgagatgggacaggaaatcaacagcgctgccctcatggagttacagggacacatcggcagattccagcggcagtcgttgtctctgctggtgcgtctggtgggcactgatcgcgctcgctaccttaagcagattgaggacaccgtttctcccagcaacctagcagaaaaaagagaggaaatggaggttgccatgcaacagatctgtgctaatattatggagtactgccagacgctgctgctgcagagctcatctgaagcccagttctcactctgtctgttcagcccatcagcaagtgaaccagccgatgtgtccatcccctctgcccgcgtgcccagtctggggctggttctgctcctgctgaaaaacagcgccagcgacttcttcaggtatcacgacagtcacagacagagcctgaacaagctggagcgagtggagcagcttcctcctgaggaactcaaagagctgtgccagggtttggtgtctggttctggtggagtggaaaagatctcatcagtgcagagaaacgtactcgccaaacggagactcgtccagctggtcaacaacagagccaagcttcttgccctctgctcttatatcattgagacgtgtctgtttgtcatctggcgccacctagagttttacttgctttactgcactcccactgaccccaaagactcactgctgccaggttacagagatcctgcaggcagcagaggattgagcgtgtcgagagtgagccagcaagatcttgaacagttgcagagtgacatgtcgagcagcttcagtgagccgctgcagaggaagctgctggaggtggagggactttatagcaaaagccgctctcgtcacaccttcatccaggccctgacacgcaggatccgcggcctcgtacaccacgccaaaagctgaactccggcatgcagattttctctaattgtgagaaaagaaaaatcttttgaattcggtgtctttttttgcagttttgatgactatcaatccacacatgaggttttctgcctatgatagtcgctgtattggctttctgcttttttctaatgtggtcattaaatgcttttctaacagaca

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