LOCUS       NM_001166140             819 bp    mRNA    linear   VRT 06-JUL-2017
DEFINITION  Danio rerio NK6 homeobox 3 (nkx6.3), mRNA.
ACCESSION   NM_001166140 XM_679812
VERSION     NM_001166140.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 819)
  AUTHORS   Malmquist SJ, Abramsson A, McGraw HF, Linbo TH and Raible DW.
  TITLE     Modulation of dorsal root ganglion development by ErbB signaling
            and the scaffold protein Sorbs3
  JOURNAL   Development 140 (19), 3986-3996 (2013)
   PUBMED   24004948
  REMARK    Erratum:[Development. 2017 Jan 1;144(1):173. PMID: 27979883]
REFERENCE   2  (bases 1 to 819)
  AUTHORS   Wotton KR, Weierud FK, Juarez-Morales JL, Alvares LE, Dietrich S
            and Lewis KE.
  TITLE     Conservation of gene linkage in dispersed vertebrate NK homeobox
            clusters
  JOURNAL   Dev. Genes Evol. 219 (9-10), 481-496 (2009)
   PUBMED   20112453
REFERENCE   3  (bases 1 to 819)
  AUTHORS   Hutchinson SA, Cheesman SE, Hale LA, Boone JQ and Eisen JS.
  TITLE     Nkx6 proteins specify one zebrafish primary motoneuron subtype by
            regulating late islet1 expression
  JOURNAL   Development 134 (9), 1671-1677 (2007)
   PUBMED   17376808
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BX571947.8.
            
            On May 21, 2010 this sequence version replaced XM_679812.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA2168446,
                              SAMEA2168447 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-418               BX571947.8         174912-175329       c
            419-588             BX571947.8         173093-173262       c
            589-819             BX571947.8         172655-172885       c
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="8"
                     /map="8"
     gene            1..819
                     /gene="nkx6.3"
                     /note="NK6 homeobox 3"
                     /db_xref="GeneID:558978"
                     /db_xref="ZFIN:ZDB-GENE-070810-7"
     CDS             1..819
                     /gene="nkx6.3"
                     /note="transcription factor Nkx6.3"
                     /codon_start=1
                     /product="homeobox protein Nkx-6.3"
                     /protein_id="NP_001159612.1"
                     /db_xref="GeneID:558978"
                     /db_xref="ZFIN:ZDB-GENE-070810-7"
                     /translation="

MESNISGSFLFNNSLNQFPSDIKAPVCQYSIPNSFYKLGPANINSQLQAGTPHGISDILSRSMVSGPGTPALLSGYPSMGGFGTTVPSPGVYYNRDYTPSGLSTFPKPVVECAGMKGKSSSCWVDGGYEWRGARQQCGNNMGHNPENVGKKKHTRPTFSGHQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKSATEPSSTQTSRGESAGDGSENEVEDEEYNKPLDPDTDDEKIRQLLRKHRRAFSVLRLGPHHI"

     misc_feature    448..624
                     /gene="nkx6.3"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      

atggagtccaacatctcaggatccttcctctttaacaacagcttgaaccaatttccgtcagacatcaaggccccggtgtgccagtactccattcccaactccttctacaagcttggccctgccaatatcaactcacagttacaggctggcactccgcatggcatcagtgacattctgagtcgatccatggtgagcggtccaggaacccctgcactattgtctgggtacccatccatgggtggctttggaacaactgttcccagtccgggggtgtattataatcgggattacaccccatcaggactgagcacttttcctaaacctgttgtcgaatgtgcaggtatgaagggtaaaagcagcagctgctgggtggatggagggtatgagtggagaggcgcgagacagcagtgtggcaacaatatggggcataatcctgagaatgtggggaaaaaaaagcacacacgacctacattcagtgggcatcagatctttgctctggagaaaacctttgaacagaccaagtatttggcaggaccagagagagccagactggcatactcgctagggatgactgagtcacaagttaaagtgtggttccagaatcggcgtactaaatggcggaaaaagagcgcaacggagcccagttccacacagacctcgcgtggggagagtgcaggagacgggtcggaaaatgaggtggaggacgaggagtacaacaaacctctggaccccgacacagacgatgagaagatacgacagctgctgcgcaaacaccgcagagctttctcagtactgcgcctggggccacaccatatctga

//