LOCUS       NM_001128746            1163 bp    mRNA    linear   VRT 16-SEP-2024
DEFINITION  Danio rerio transmembrane protein 178Ba (tmem178ba), mRNA.
ACCESSION   NM_001128746 XM_692374
VERSION     NM_001128746.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1163)
  AUTHORS   Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I,
            Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and
            Bobe J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1163)
  AUTHORS   Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M,
            Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD,
            Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov
            GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and
            Hertzano R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC163684.1.
            
            On Jul 31, 2008 this sequence version replaced XM_692374.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC163684.1, EH440133.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA3505370, SAMEA3505371
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1163
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="25"
                     /map="25"
     gene            1..1163
                     /gene="tmem178ba"
                     /gene_synonym="zgc:194665; zgc:194696"
                     /note="transmembrane protein 178Ba"
                     /db_xref="GeneID:569012"
                     /db_xref="ZFIN:ZDB-GENE-080722-38"
     exon            1..424
                     /gene="tmem178ba"
                     /gene_synonym="zgc:194665; zgc:194696"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    13..15
                     /gene="tmem178ba"
                     /gene_synonym="zgc:194665; zgc:194696"
                     /note="upstream in-frame stop codon"
     CDS             43..936
                     /gene="tmem178ba"
                     /gene_synonym="zgc:194665; zgc:194696"
                     /note="transmembrane protein 178-like"
                     /codon_start=1
                     /product="transmembrane protein 178Ba precursor"
                     /protein_id="NP_001122218.1"
                     /db_xref="GeneID:569012"
                     /db_xref="ZFIN:ZDB-GENE-080722-38"
                     /translation="

MATGKWLLYTGLCLSLVALCFLTVAISSDHWYETDARRYKERCRTFSNRRSDPGFIYIPTHSLPLRASRASLDRWEDRLLLTRNRRQLFAMSAADECSRRYNSTNMGLWSKCYRVGFDPDVEDLIKNGTIERCSFIKYYYSSSAVARKDLSYNITKAIQQDDWHALHLRRMTAGFMGMALSIILFGWTIGLLGCCWEQGLMHYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRYLFSLPDDISHGYGWSMFSAWGGLGLTLIAGFFCTLAPSIQPPPPTRTSCPKSRMENGTVC"

     sig_peptide     43..123
                     /gene="tmem178ba"
                     /gene_synonym="zgc:194665; zgc:194696"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    343..843
                     /gene="tmem178ba"
                     /gene_synonym="zgc:194665; zgc:194696"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
     exon            425..541
                     /gene="tmem178ba"
                     /gene_synonym="zgc:194665; zgc:194696"
                     /inference="alignment:Splign:2.1.0"
     exon            542..679
                     /gene="tmem178ba"
                     /gene_synonym="zgc:194665; zgc:194696"
                     /inference="alignment:Splign:2.1.0"
     exon            680..1163
                     /gene="tmem178ba"
                     /gene_synonym="zgc:194665; zgc:194696"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agctgtccagcatgaggtgctgatcggcggcctggcagaacgatggcgacggggaagtggcttctctacacggggctctgtctgtctctcgtcgccttgtgtttcctgacagtcgcaatctcttccgaccactggtacgaaacggacgcgaggagatacaaggagcgctgccgaactttctcgaaccgcaggagcgacccgggcttcatttacatccccacccacagccttcctctgcgagccagccgagcgagtctggaccgatgggaagaccgactgctgctcactagaaaccggcggcagctgttcgccatgagcgcggcggatgagtgcagcagacgctacaattcaaccaacatggggctctggagcaaatgctacagggtgggatttgacccagacgtcgaagacctcatcaagaatggaactatcgagcgttgctcctttataaagtactattactcctcctctgcagtggcgcgaaaggatctctcctataacatcactaaggctatccagcaagatgattggcatgctctgcatttgcgtcggatgacagctggcttcatgggcatggctctatccattattctctttggctggaccattggccttttaggatgttgttgggagcaaggcctcatgcattacgttgccggtctactctttctaatgggaggtaccttctgcatcatctctctttgcacctgtgtggccggaatcaacttcgaattgtctcgctacccacgttatctcttcagcctcccagatgatataagccatggttacggctggtccatgtttagtgcctggggagggctgggactaaccctcattgctgggttcttctgtactctggcaccttcgattcagcctccaccaccaacccgtacctcctgtcccaagtctcgtatggagaacggaacagtgtgttaaagagtcacgttaggagactgacatgaacttgtgtataaactttgtcatgggttttaaaagcatggagctgttgaaagactcaaaggtcacaatccatggcggttgggactctcctttgatgtgccgaatgatggatctgttataaaagcacatttgtacagttgtataaaagctttcatcctgacatgagtagggcatgtccttggtgaagcggttgttggtgttcg

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