LOCUS       NM_001109828            2038 bp    mRNA    linear   VRT 12-APR-2020
DEFINITION  Danio rerio zgc:171971 (zgc:171971), mRNA.
ACCESSION   NM_001109828 XM_693089
VERSION     NM_001109828.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 2038)
  AUTHORS   Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M,
            Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD,
            Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov
            GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and
            Hertzano R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
COMMENT     PREDICTED REFSEQ: This record has not been reviewed and the
            function is unknown. The reference sequence was derived from
            BC153322.1.
            
            On Oct 10, 2007 this sequence version replaced XM_693089.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC153322.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA4476795, SAMEA4476798
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="12"
                     /map="12"
     gene            1..2038
                     /gene="zgc:171971"
                     /note="zgc:171971"
                     /db_xref="GeneID:569690"
                     /db_xref="ZFIN:ZDB-GENE-070928-37"
     exon            1..82
                     /gene="zgc:171971"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    60..62
                     /gene="zgc:171971"
                     /note="upstream in-frame stop codon"
     exon            83..257
                     /gene="zgc:171971"
                     /inference="alignment:Splign:2.1.0"
     CDS             84..1256
                     /gene="zgc:171971"
                     /codon_start=1
                     /product="uncharacterized protein LOC569690"
                     /protein_id="NP_001103298.1"
                     /db_xref="GeneID:569690"
                     /db_xref="ZFIN:ZDB-GENE-070928-37"
                     /translation="

MCDHGDGDAEASSSSTFRPSFALGNVKGLPGRISHNPPPPGRLTSLRSRDLTLGGFKKKTFVPNVHSVRKSKDELQEEPHSAPKKERRDREDRHRERRQRREKPQTIQSHSIFEQGPADTYRKLGNWGSSNLTACDPALVTKCIKKEKNNTEDDDNAILQKLTRDDFLDDPGLKNDPKQRPIRLPLHQSCNFLSTDAASSFKEETTSDNPRHSPRVEQKYPQTSRSSSAGPEQPTVGELFQQLSVSDKEELLFIQLPDTIPGQPKTSSPEKTRKDCKAEEKRTAHIKAIDKPDKSTVPVLSDFSEGLIGKLQIRKSGKVQLVMGNVTLDVSEGAAFSFLQQLVCVRLSEGLTGDMTVLGNITHKLACSPDFETLLQEAKIASDSRSVSKS"

     misc_feature    825..1196
                     /gene="zgc:171971"
                     /note="RNA polymerase III RPC4; Region: RNA_pol_Rpc4;
                     pfam05132"
                     /db_xref="CDD:461558"
     exon            258..304
                     /gene="zgc:171971"
                     /inference="alignment:Splign:2.1.0"
     exon            305..456
                     /gene="zgc:171971"
                     /inference="alignment:Splign:2.1.0"
     exon            457..581
                     /gene="zgc:171971"
                     /inference="alignment:Splign:2.1.0"
     exon            582..684
                     /gene="zgc:171971"
                     /inference="alignment:Splign:2.1.0"
     exon            685..950
                     /gene="zgc:171971"
                     /inference="alignment:Splign:2.1.0"
     exon            951..1103
                     /gene="zgc:171971"
                     /inference="alignment:Splign:2.1.0"
     exon            1104..2022
                     /gene="zgc:171971"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

accaatgatgctcctgcaaggatgtagctgtcagctggaagagttcggcagatatgatgtgagcagtttacacaaatttcaagatgtgtgatcatggagatggggacgcagaggcgagctcatcttccactttcagaccgtcttttgctctgggcaacgttaaaggactgccagggagaatttcacacaatcctcctccaccaggcagactgacctccctgcggtccagagacctgaccctgggaggatttaaaaagaaaacctttgttccaaatgttcactccgttcgcaaaagtaaagatgagttacaggaggagcctcacagtgcaccaaaaaaagagagaagagacagggaagacagacacagagagagacgacagcgacgagaaaagcctcagaccattcagtctcactctatctttgagcagggccctgctgacacctataggaaactaggtaattggggcagctctaacctaactgcttgtgatcctgcactggtcacaaaatgcattaaaaaggaaaagaacaacacagaggacgacgacaatgcaattttacaaaaactcacacgagacgattttttggatgatcctggactgaaaaacgaccccaagcaaagaccaatcagacttccactccatcagtcatgcaactttttgtcaacggatgcagctagttcatttaaagaagaaactacgtctgataatccaagacattcaccaagagttgagcagaaatacccgcagacatcgaggagctcatctgcaggtccagaacagccaacagtcggagaacttttccagcagctcagcgtttcagataaagaagagctgctgtttattcagcttccagataccatacctggtcaacctaaaacctccagcccagagaaaaccagaaaggattgcaaggcagaagagaagcgtacagcgcatattaaagctatagacaagcctgataaaagcaccgttcctgtattgtctgacttctcagagggtctgattggaaaactgcaaatcagaaagtctggtaaagtccagttggtcatgggaaatgttacattagacgtctcagagggagcagccttctctttcctgcagcaactggtgtgtgtgcgtctgtcggagggccttaccggggacatgaccgtgctcggaaacatcacacacaagctggcgtgttcgcccgactttgagactttactgcaagaagccaaaatagcgtcggattctcgctctgtttctaagtcctgatttgatcactcaggcatatttaaactaatgatgtaaataactgtttttataatgttttatttgtgaagttaagtgtcctgagagttacactataagctaatatttgccatttgatggggtaaacgttttttttttttctttctaggtttttactcagcaaggttgaatttattgaacaaaatacagtaaaaacaatattgttaagtttcattacagtaaaacatttttctagttggttataaccatcatgaatatcattatataggccaaaagctaaggattttttaatggccagcatagaagaaaacttacttgcaccatcaagaaacaaattctaatttgcaatttgtgtagctttagagaaaaatgaagacttgcttaaaataatttattaattaattaagaccttcaagactaatattccagtaaatttaggactttaagactttaaatttacttatttgaaatgtaagactttaagacccagcggacaccctgtagttattctaaaattaaaattattcatatgatggtaaagctgaattttcagaattttaacagtggtcagatcataaagtgctgattaaatattaaattatacgttttcaatgttgaaaataggctttgcatatttttgtggaaacaaaattcaaattcaaaaataattcaataatacaaggtattcatattttacacctagttgaatcaatatttgtttgcgattaatgctttatagaatgaatgcaataaactaattataataagaaaaaaaaaaaaaaaaa

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