LOCUS       NM_001109704            1662 bp    mRNA    linear   VRT 18-JAN-2021
DEFINITION  Danio rerio tripartite motif containing 35-28 (trim35-28), mRNA.
ACCESSION   NM_001109704 XM_682685
VERSION     NM_001109704.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1662)
  AUTHORS   Yu T, Kuang H, Chen J, Lin X, Wu Y, Chen K, Zhang M, Zhang W and
            Wen Z.
  TITLE     Tripartite-motif family protein 35-28 regulates microglia
            development by preventing necrotic death of microglial precursors
            in zebrafish
  JOURNAL   J Biol Chem 295 (26), 8846-8856 (2020)
   PUBMED   32398256
  REMARK    GeneRIF: Tripartite-motif family protein 35-28 regulates microglia
            development by preventing necrotic death of microglial precursors
            in zebrafish.
REFERENCE   2  (bases 1 to 1662)
  AUTHORS   Langevin C, Aleksejeva E, Houel A, Briolat V, Torhy C, Lunazzi A,
            Levraud JP and Boudinot P.
  TITLE     FTR83, a Member of the Large Fish-Specific finTRIM Family, Triggers
            IFN Pathway and Counters Viral Infection
  JOURNAL   Front Immunol 8, 617 (2017)
   PUBMED   28603526
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1662)
  AUTHORS   Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M,
            Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD,
            Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov
            GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and
            Hertzano R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1662)
  AUTHORS   Boudinot P, van der Aa LM, Jouneau L, Du Pasquier L, Pontarotti P,
            Briolat V, Benmansour A and Levraud JP.
  TITLE     Origin and evolution of TRIM proteins: new insights from the
            complete TRIM repertoire of zebrafish and pufferfish
  JOURNAL   PLoS One 6 (7), e22022 (2011)
   PUBMED   21789205
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC151916.1.
            
            On Oct 5, 2007 this sequence version replaced XM_682685.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC151916.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2168446, SAMEA2168447
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="16"
                     /map="16"
     gene            1..1662
                     /gene="trim35-28"
                     /gene_synonym="zgc:171672"
                     /note="tripartite motif containing 35-28"
                     /db_xref="GeneID:559351"
                     /db_xref="ZFIN:ZDB-GENE-071004-19"
     exon            1..541
                     /gene="trim35-28"
                     /gene_synonym="zgc:171672"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    98..100
                     /gene="trim35-28"
                     /gene_synonym="zgc:171672"
                     /note="upstream in-frame stop codon"
     CDS             113..1546
                     /gene="trim35-28"
                     /gene_synonym="zgc:171672"
                     /codon_start=1
                     /product="tripartite motif containing 35-28"
                     /protein_id="NP_001103174.1"
                     /db_xref="GeneID:559351"
                     /db_xref="ZFIN:ZDB-GENE-071004-19"
                     /translation="

MADSSDDDITDRPPLLETDLTCPVCKDIFKEPELLSCSHSFCKVCLEGSWKNQTKRQCPMCRKCCDGETPIPNRALHNACVSYKKERNRRGATTGSEEELCGLHQRPFQLFCIKDEEPVCVECVTLHPGHELVPTEQGVPFCKDELTMKIKILESKLDSFKRMKKRYKETITFIEGQTKEAENQIKQEFERLHQVLNEEEKTRLLALSREEDEKKQVVTEKIEAIGRDITGLAELIQSVKREMGAEDLTFLLNFQKLKRRTQWTGDDPRRVYGALINMALHVGALGYKIWESMQAHVTCLPVILDPNTASPWLSISPDFSSMQESRERQSFPDNPERFDPCVFVLGSEGFSSGRHRWEVRVADHPKWILGVCKESVVRKRKFTVTTTAGVWTIGLSKGVYNALTSPRTVLNLERRPETVRVKVNMEKGEVSFWDTGNNKHLCTFNDKFTGKLFPIFGPGLQSTPITILPAKVNIHKQ"

     misc_feature    158..>304
                     /gene="trim35-28"
                     /gene_synonym="zgc:171672"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(176..178,185..187,221..223,227..229,236..238,
                     245..247,284..286,293..295)
                     /gene="trim35-28"
                     /gene_synonym="zgc:171672"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438111"
     misc_feature    410..523
                     /gene="trim35-28"
                     /gene_synonym="zgc:171672"
                     /note="B-box-type zinc finger superfamily; Region:
                     Bbox_SF; cl00034"
                     /db_xref="CDD:469587"
     misc_feature    539..>829
                     /gene="trim35-28"
                     /gene_synonym="zgc:171672"
                     /note="coiled-coil (CC) domain of Drosophila brain tumor
                     (brat) and similar proteins; Region: CC_brat-like;
                     cl29238"
                     /db_xref="CDD:475168"
     misc_feature    1013..1519
                     /gene="trim35-28"
                     /gene_synonym="zgc:171672"
                     /note="PRY/SPRY domain in tripartite motif-containing
                     protein 35 (TRIM35); Region: SPRY_PRY_TRIM35; cd12893"
                     /db_xref="CDD:293950"
     exon            542..637
                     /gene="trim35-28"
                     /gene_synonym="zgc:171672"
                     /inference="alignment:Splign:2.1.0"
     exon            638..868
                     /gene="trim35-28"
                     /gene_synonym="zgc:171672"
                     /inference="alignment:Splign:2.1.0"
     exon            869..891
                     /gene="trim35-28"
                     /gene_synonym="zgc:171672"
                     /inference="alignment:Splign:2.1.0"
     exon            892..1010
                     /gene="trim35-28"
                     /gene_synonym="zgc:171672"
                     /inference="alignment:Splign:2.1.0"
     exon            1011..1646
                     /gene="trim35-28"
                     /gene_synonym="zgc:171672"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agcaaacacgagaggattcgtgtaattaatatcgttatttataaaacagcgtttaaactctcctaccgatataacattagtagtgaaagcgaaactatagctcggatccgacatggcagatagcagtgacgatgatattacagacaggccacctcttctggagacagacttaacgtgtcctgtgtgcaaagacatttttaaggagcccgagttgctttcgtgtagtcacagtttctgtaaggtatgcctggaagggagctggaagaaccaaacgaaacggcagtgccccatgtgccgaaaatgctgcgacggagagacgccgatccccaaccgtgcactacataacgcctgtgtgtcctacaagaaagagagaaaccggagaggagctactacgggttcagaggaagaactctgtggtttgcaccagcggcccttccagctcttttgcatcaaagacgaagagcccgtgtgcgtggagtgcgtgactcttcatccgggacacgagctggtgcccaccgagcaaggggttcctttctgcaaggatgagcttaccatgaaaatcaaaattctggaaagcaaactggactcctttaaaagaatgaaaaaaagatacaaagaaacaatcacctttattgagggccagactaaggaggcagaaaaccaaatcaaacaggagtttgagagacttcatcaagtcttaaatgaagaggagaaaacaagactgttggctttaagtagagaggaagacgaaaagaaacaagtggtgactgagaagattgaagccatcggtcgtgacatcacaggccttgctgaactgattcagtctgtaaagagggaaatgggagctgaagatttgacctttcttctgaatttccaaaagttaaaaagaagaacccagtggactggtgatgaccccagaagggtttacggagccctcatcaacatggccttgcatgtaggcgctctgggttacaaaatctgggagagtatgcaggctcacgtcacatgtttgcctgtaatcctggatcccaacacagcttcaccatggctctccatatctcctgatttttccagcatgcaagagagtcgagaaagacagtctttcccagacaaccctgaaaggtttgatccatgtgtgtttgtactcggctcagagggtttctcctcagggcgtcatcgttgggaggtccgtgtggccgaccaccccaaatggatcttgggtgtttgcaaggagtcagtagttcggaagaggaagttcactgtgaccacaacagcaggagtttggaccatcggccttagtaaaggtgtctacaacgctctaacaagtccacgcactgtgctcaatctagagagaagacccgaaactgtcagggtgaaggtcaatatggagaagggagaggtgtctttctgggacacaggcaacaacaagcatctgtgcacgtttaacgataagttcactgggaagctctttcccatctttggcccagggctccagagcacacctatcactatcttacctgctaaagtgaacatacacaaacaataagtacaaatgacaacgcgtaagagtctaaaatgtctgcagtactatttgaatttaatcaaattaatgtaacatttgggattcagtaaaaggtcaattaacaaaaaaaaaaaaaaaaa

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