LOCUS       NM_001025453            1496 bp    mRNA    linear   VRT 09-APR-2020
DEFINITION  Danio rerio eukaryotic translation initiation factor 1A X-linked b
            (eif1axb), mRNA.
ACCESSION   NM_001025453 XM_678928 XM_702231
VERSION     NM_001025453.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1496)
  AUTHORS   Bayes A, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A,
            Choudhary JS, Emes RD and Grant SG.
  TITLE     Evolution of complexity in the zebrafish synapse proteome
  JOURNAL   Nat Commun 8, 14613 (2017)
   PUBMED   28252024
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1496)
  AUTHORS   Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I,
            Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and
            Bobe J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1496)
  AUTHORS   Yi T, Arthanari H, Akabayov B, Song H, Papadopoulos E, Qi HH,
            Jedrychowski M, Guttler T, Guo C, Luna RE, Gygi SP, Huang SA and
            Wagner G.
  TITLE     eIF1A augments Ago2-mediated Dicer-independent miRNA biogenesis and
            RNA interference
  JOURNAL   Nat Commun 6, 7194 (2015)
   PUBMED   26018492
  REMARK    GeneRIF: eIF1A is a novel component of the Ago2-centred RNA-induced
            silencing complexes (RISCs) and augments Ago2-dependent RNAi and
            miRNA biogenesis.
            Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1496)
  AUTHORS   Kobayashi I, Ono H, Moritomo T, Kano K, Nakanishi T and Suda T.
  TITLE     Comparative gene expression analysis of zebrafish and mammals
            identifies common regulators in hematopoietic stem cells
  JOURNAL   Blood 115 (2), e1-e9 (2010)
   PUBMED   19890097
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC096794.1.
            
            On or before Jul 16, 2005 this sequence version replaced
            XM_678928.1, XM_702231.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC096794.1, BC155227.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA4476734, SAMEA4476744
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1496
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="24"
                     /map="24"
     gene            1..1496
                     /gene="eif1axb"
                     /gene_synonym="wu:fb26b09; wu:fb38c07; wu:fb66g07;
                     wu:fk26d12; zgc:110087"
                     /note="eukaryotic translation initiation factor 1A
                     X-linked b"
                     /db_xref="GeneID:322599"
                     /db_xref="ZFIN:ZDB-GENE-030131-1319"
     exon            1..155
                     /gene="eif1axb"
                     /gene_synonym="wu:fb26b09; wu:fb38c07; wu:fb66g07;
                     wu:fk26d12; zgc:110087"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    131..133
                     /gene="eif1axb"
                     /gene_synonym="wu:fb26b09; wu:fb38c07; wu:fb66g07;
                     wu:fk26d12; zgc:110087"
                     /note="upstream in-frame stop codon"
     CDS             140..574
                     /gene="eif1axb"
                     /gene_synonym="wu:fb26b09; wu:fb38c07; wu:fb66g07;
                     wu:fk26d12; zgc:110087"
                     /codon_start=1
                     /product="eukaryotic translation initiation factor 1A
                     X-linked b"
                     /protein_id="NP_001020624.1"
                     /db_xref="GeneID:322599"
                     /db_xref="ZFIN:ZDB-GENE-030131-1319"
                     /translation="

MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDIDDI"

     misc_feature    140..532
                     /gene="eif1axb"
                     /gene_synonym="wu:fb26b09; wu:fb38c07; wu:fb66g07;
                     wu:fk26d12; zgc:110087"
                     /note="eukaryotic translation initiation factor 1A;
                     Provisional; Region: PTZ00329"
                     /db_xref="CDD:185558"
     misc_feature    order(260..265,275..277,317..328,335..337,350..352)
                     /gene="eif1axb"
                     /gene_synonym="wu:fb26b09; wu:fb38c07; wu:fb66g07;
                     wu:fk26d12; zgc:110087"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:240219"
     exon            156..239
                     /gene="eif1axb"
                     /gene_synonym="wu:fb26b09; wu:fb38c07; wu:fb66g07;
                     wu:fk26d12; zgc:110087"
                     /inference="alignment:Splign:2.1.0"
     exon            240..343
                     /gene="eif1axb"
                     /gene_synonym="wu:fb26b09; wu:fb38c07; wu:fb66g07;
                     wu:fk26d12; zgc:110087"
                     /inference="alignment:Splign:2.1.0"
     exon            344..394
                     /gene="eif1axb"
                     /gene_synonym="wu:fb26b09; wu:fb38c07; wu:fb66g07;
                     wu:fk26d12; zgc:110087"
                     /inference="alignment:Splign:2.1.0"
     exon            395..476
                     /gene="eif1axb"
                     /gene_synonym="wu:fb26b09; wu:fb38c07; wu:fb66g07;
                     wu:fk26d12; zgc:110087"
                     /inference="alignment:Splign:2.1.0"
     exon            477..568
                     /gene="eif1axb"
                     /gene_synonym="wu:fb26b09; wu:fb38c07; wu:fb66g07;
                     wu:fk26d12; zgc:110087"
                     /inference="alignment:Splign:2.1.0"
     exon            569..1464
                     /gene="eif1axb"
                     /gene_synonym="wu:fb26b09; wu:fb38c07; wu:fb66g07;
                     wu:fk26d12; zgc:110087"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtgcttgtcagcttttctcgcaagcggcgctgatctgctcaccaacagcacgtttgagaagtaaaatctttgacatatggttataactccctgacgtttctgatctttacacgacagccgtcgacgtgcttaaacaaatatgccgaaaaacaaaggaaaaggaggaaaaaataggcgacgtggtaagaacgagaatgaatctgagaagagagagctggtgttcaaagaggatggacaagaatatgctcaggtcatcaagatgttgggaaatgggagactggaggccatgtgtttcgatggagtcaagcggctttgtcacatccgaggaaagctccggaaaaaggtgtggatcaacacgtcagacattatactcattggattaagggactaccaggataacaaagcagatgttattttgaagtataatgccgacgaggctaggagtctgaaagcctacggagagcttccagaacacgccaaaatcaacgagactgataccttcgggcctggggatgacgatgagattcagtttgatgatatcggtgatgatgacgaggacattgatgatatctaaaagatgctgagaagtgaatatttctcagtccgaagtgaaaatcctccccagaagtcgcccctccatcattatgtactcggaggctcaagttttaggtttctctgactaaacacacaaccgctttgtcacattcaattcattttgttatctcttaatgtatttatattgatttcacatcaagtggaatttagtgacaagtacagaatctatggattcgcaataaaaaaagataaccaattttatgtttggtcttgcagtctgtgtcctaaaagacattcaaaacctctgtaaagatgagtaagactcttgtgagaaaagctgatacctctagatagcctcttgtcttcttgaatgtttttgaaaagtctcatcatttgctggtcacaaaatcgatgcattggctgatgcatttattcagaaagcctgtctccgacttgctctgttttaatccatcttcttttcttttttctttttgtattcaaatgattgagtacccctttttccagggctgctttatgaaaataatcttatgtgttactagcttgacactaagctacagtaaacatcagcaactgaaatatttgtaagatgaaaatggaaacttctttttctttttttttttactttctaaaacgatactcacaaagcaaataaccagactgagtattttgtatgcgcgtaggcagattaatgcaaaagtcaggaaattttattgattgtattcctgcagaactggccctcttgactgaaaatggtggttgttggttataacatgttaattttagctgcattgttttgatgagctcacgatgcttgctttttgtcctctgctgcttttgatcagaaaacctgtgattttgaaataaaattcaacgacattcaaaatcctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

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