LOCUS       NM_001017799            1786 bp    mRNA    linear   VRT 15-OCT-2021
DEFINITION  Danio rerio claudin 8.2 (cldn8.2), mRNA.
ACCESSION   NM_001017799
VERSION     NM_001017799.2
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1786)
  AUTHORS   Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M,
            Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD,
            Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov
            GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and
            Hertzano R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1786)
  AUTHORS   Baltzegar DA, Reading BJ, Brune ES and Borski RJ.
  TITLE     Phylogenetic revision of the claudin gene family
  JOURNAL   Mar Genomics 11, 17-26 (2013)
   PUBMED   23726886
COMMENT     PREDICTED REFSEQ: This record has not been reviewed and the
            function is unknown. The reference sequence was derived from
            BC129277.1.
            
            On Jan 10, 2007 this sequence version replaced NM_001017799.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC129277.1, DV597696.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2168446 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1786
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="15"
                     /map="15"
     gene            1..1786
                     /gene="cldn8.2"
                     /gene_synonym="cldn8d; sb:cb574; zgc:110333"
                     /note="claudin 8.2"
                     /db_xref="GeneID:550497"
                     /db_xref="ZFIN:ZDB-GENE-050417-331"
     misc_feature    419..421
                     /gene="cldn8.2"
                     /gene_synonym="cldn8d; sb:cb574; zgc:110333"
                     /note="upstream in-frame stop codon"
     CDS             473..1378
                     /gene="cldn8.2"
                     /gene_synonym="cldn8d; sb:cb574; zgc:110333"
                     /note="claudin 8-like"
                     /codon_start=1
                     /product="uncharacterized protein LOC550497"
                     /protein_id="NP_001017799.1"
                     /db_xref="GeneID:550497"
                     /db_xref="ZFIN:ZDB-GENE-050417-331"
                     /translation="

MSYTAGSYTAKSYADKSYADKSYADKSYAYTGYTDEKSAQEAYDEQLKKEKRKRRDSMCCEVVALIIGFVGLIGVAAVTGLPMWKVTAFIQENIIVMETRWEGLWMNCYRQANIRMQCKVYDSLLYLPPDLQAARGLMCSSVALTAIGCIVATVGMRCTRLVDSRPKVKHIVLVSGGCLFLAGCLTTIIPVSWTAHVIIQDFYNPLLIDAQRRELGEALYVGWVTSALLFIAGVILLCRHAPRTQAKEDMATVLYRAGSAPYNYSYAPGYGYQPPYGYQPGYTYQPTYSPVPPTVYSQPRY"

     misc_feature    656..1180
                     /gene="cldn8.2"
                     /gene_synonym="cldn8d; sb:cb574; zgc:110333"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
ORIGIN      

ttgaaatcagtgtgttttcattccaggcctcaaacaagcctctatttcagctaaagtgtccattaatgtcccataagtatttcccatagtatgtatagcggctctttgtggacaggaatgaaacttatctgtctagtgaaagtaaagtgtgtaatatcgactgagtagctttctataagtcacctgcagcttgtgtcgctgttgttttgattggtttgtcgtgtgaaactcaagtcacacatggtttcccagcggctcgacccgtcagacagatgtttgaaatcgaaagaagacaaactttacactttacacgtttgtactttacagcaatgtgatttggatcaaaatgaagatgtttgaaactgaaagaagaccaattctcagtttgtactttacagccatgtgatttggatcaaaatgagggaacgccgtcgtgacagagaacgtctttctgtcttggtactcaacaatcatgtcttacacggctggctcgtacacagccaaatcctacgcagacaaatcctacgcggacaaatcctacgcggacaagtcctacgcgtacacaggctacacagatgagaaatctgcacaggaggcctacgatgagcagctcaagaaggagaaaagaaagaggcgggattcgatgtgctgcgaagttgtcgcactcatcatcggttttgtcggattgatcggagtcgcagcagtcaccggtctccccatgtggaaagtgaccgctttcatccaggagaacatcattgtgatggagacccgctgggagggtttatggatgaactgctacaggcaagccaacatccgaatgcaatgcaaagtgtatgattctctgctgtatcttcccccggatctccaagcagccaggggtcttatgtgctcctctgttgctttgaccgccatcggttgcattgtggccaccgtcggcatgcgttgcacccgtctggtcgattcccggcccaaagtaaagcacattgttctggtgagcggaggctgtttgtttttggctggatgcttaaccactattattccagtgtcgtggactgctcatgtgatcattcaagacttctacaaccctttgcttatcgatgcacagcgtagagagcttggcgaggctttatatgtcggatgggtcacttctgctctgcttttcatcgccggtgtgattctgctttgtcgacatgcaccaagaacccaagccaaagaagacatggctactgtcttgtatcgtgccggatcggctccctataactactcttatgcgcccggatatggataccagcctccttacggataccagcctgggtatacctatcagccgacgtattccccagtcccgccgacagtctacagccagcccagatactaagagacagtaaataaatgaaagaacttgagaagaatctgggttgaagaaagcaggactgttgatgaagaatcattgtcgattatgtctgactgtatatatgagctgtatgatgatttaaatgcatttctttattatagactgttcattatttacatttatacatgtgctagaatttaaaagccacatgtgggatatttccacacagcatttaatgttgacatagagtagtcgacgtttgaagtggttcacatctcaagacaagaaatggatgtttttgatgaaatgttttgttctgcttcaaatgttgttcgctctttatgtttttgtattgacgttgtatattttaaagcactggtttgactttaaatgtattaaaaaggagtgtcaaacgaaaaaaaaaaaaaaaaa

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