LOCUS       NM_001017650            1699 bp    mRNA    linear   VRT 03-APR-2024
DEFINITION  Danio rerio nucleolus and neural progenitor protein (nepro), mRNA.
ACCESSION   NM_001017650
VERSION     NM_001017650.2
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1699)
  AUTHORS   Pasquier,J., Cabau,C., Nguyen,T., Jouanno,E., Severac,D.,
            Braasch,I., Journot,L., Pontarotti,P., Klopp,C., Postlethwait,J.H.,
            Guiguen,Y. and Bobe,J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CR392351.12, EH549216.1 and EH570337.1.
            
            On Aug 21, 2015 this sequence version replaced NM_001017650.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: GFIL01037178.1, BC093180.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2168446, SAMEA2168447
                                           [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-50                CR392351.12        47568-47617
            51-138              EH549216.1         24-111
            139-139             CR392351.12        48701-48701
            140-894             EH549216.1         112-866
            895-1699            EH570337.1         1-805               c
FEATURES             Location/Qualifiers
     source          1..1699
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="9"
                     /map="9"
     gene            1..1699
                     /gene="nepro"
                     /gene_synonym="fi11c01; si:dkey-22a1.3; wu:fi11c01;
                     zgc:112065"
                     /note="nucleolus and neural progenitor protein"
                     /db_xref="GeneID:550343"
                     /db_xref="ZFIN:ZDB-GENE-030131-5651"
     exon            1..109
                     /gene="nepro"
                     /gene_synonym="fi11c01; si:dkey-22a1.3; wu:fi11c01;
                     zgc:112065"
                     /inference="alignment:Splign:2.1.0"
     CDS             25..1611
                     /gene="nepro"
                     /gene_synonym="fi11c01; si:dkey-22a1.3; wu:fi11c01;
                     zgc:112065"
                     /note="protein nepro homolog"
                     /codon_start=1
                     /product="nucleolus and neural progenitor protein"
                     /protein_id="NP_001017650.2"
                     /db_xref="GeneID:550343"
                     /db_xref="ZFIN:ZDB-GENE-030131-5651"
                     /translation="

MAQECWNKINIPFPSAVSSTRIPFTDSIDLLIDCLLADCEKVLTLLCSEVLQTEIRVLYELLYILNNGFRQHKPFRALKQVEQCVNRLKEMKLQAAVEDLKEVCPNKFQREAGAEAGECDVPSQPMLEWLGLKLLGASSLLGRTLERCTKAFLLTRQHLRLGEFIVLNVVITSMLSRLWVFFRGILRALIPMYRRNCELLQKVSQSQPMAYLTDFTLPEDLKDFLCLTYPDLKIEEVTKDLLKGTRGKRKSKFSLLSKLFGETEQQEEIGEGERDLMPILSAGHYEVSSLDLGAAVSQRRTDYSDVSPYGLDIKAMLQQSSKTTKQKSLEQQMKLDSSSKASLCQKRTFLKSLKKTSSFRNMAALLKELMNWCRSCKFYQEHKRLAFLSLKCGRMESLEAEGVRVEKRLKMFNIKVQKALTLQQTFPPKHSCSLPALLRTRWQNKFFMRHFRTLRRRSAVSRKSSGTVKGSLNQRRKCRPLLQSSNEVESGQNVTVSVEKEKMDSQTSLQEPNIPKDDIDDIFESFGL"

     misc_feature    40..609
                     /gene="nepro"
                     /gene_synonym="fi11c01; si:dkey-22a1.3; wu:fi11c01;
                     zgc:112065"
                     /note="Domain of unknown function (DUF4477); Region:
                     DUF4477; pfam14780"
                     /db_xref="CDD:464313"
     exon            110..264
                     /gene="nepro"
                     /gene_synonym="fi11c01; si:dkey-22a1.3; wu:fi11c01;
                     zgc:112065"
                     /inference="alignment:Splign:2.1.0"
     exon            265..353
                     /gene="nepro"
                     /gene_synonym="fi11c01; si:dkey-22a1.3; wu:fi11c01;
                     zgc:112065"
                     /inference="alignment:Splign:2.1.0"
     exon            354..482
                     /gene="nepro"
                     /gene_synonym="fi11c01; si:dkey-22a1.3; wu:fi11c01;
                     zgc:112065"
                     /inference="alignment:Splign:2.1.0"
     exon            483..560
                     /gene="nepro"
                     /gene_synonym="fi11c01; si:dkey-22a1.3; wu:fi11c01;
                     zgc:112065"
                     /inference="alignment:Splign:2.1.0"
     exon            561..937
                     /gene="nepro"
                     /gene_synonym="fi11c01; si:dkey-22a1.3; wu:fi11c01;
                     zgc:112065"
                     /inference="alignment:Splign:2.1.0"
     exon            938..1002
                     /gene="nepro"
                     /gene_synonym="fi11c01; si:dkey-22a1.3; wu:fi11c01;
                     zgc:112065"
                     /inference="alignment:Splign:2.1.0"
     exon            1003..1235
                     /gene="nepro"
                     /gene_synonym="fi11c01; si:dkey-22a1.3; wu:fi11c01;
                     zgc:112065"
                     /inference="alignment:Splign:2.1.0"
     exon            1236..1699
                     /gene="nepro"
                     /gene_synonym="fi11c01; si:dkey-22a1.3; wu:fi11c01;
                     zgc:112065"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

tctccccggcagtcagctgtaaacatggcgcaggagtgctggaataaaataaacattccgtttccaagtgctgtctcttcgactcgaatcccatttacggattcgatagatctcttgattgattgcttgctggctgactgtgagaaagtgttgaccctgttatgtagtgaagttcttcagacagaaatccgtgtgctgtacgaactgctttacattttgaacaatggcttcagacaacacaagccattccgtgcattaaagcaggttgagcaatgtgtaaaccgtttaaaagagatgaagttacaagcagcggtggaagatctgaaggaagtgtgtccaaacaaatttcagagggaagccggagccgaggctggggagtgtgatgttcccagtcagcccatgttggagtggctcggcctcaagctgcttggagcctccagtcttttaggccgaacgctggaacgatgcaccaaagctttcttattaacacgacagcatctgcgtctgggcgagttcattgtgctgaatgtggtgataaccagcatgctcagtcgtctctgggtttttttcagaggtattctgcgagccctcatccccatgtacagaagaaactgtgaactgctccagaaggtgtctcagtctcagcccatggcctatctgactgacttcactctacctgaggacctgaaagacttcctgtgcctcacataccctgatctaaagattgaagaagttaccaaagacctcttaaagggcacaagaggaaaaagaaagtccaaattttctctcctttccaagttgtttggggagaccgagcaacaagaagagattggagaaggggagagagatctgatgccaatattaagcgctggacattatgaagtttctagcctggacctcggagcagcagtttcacaacgacggaccgattactcagatgtgtcaccctatggactggacataaaggctatgcttcagcagtcttccaaaaccaccaaacagaaatctttggagcaacagatgaaattggacagctccagtaaagcatcattgtgtcagaagaggacgtttttgaagtcactgaagaagacgtcttcttttagaaacatggcagccctattaaaggaactgatgaactggtgccggagctgcaagttttatcaagagcacaaacgcctggccttcctgagcctgaagtgtgggagaatggaaagtctggaagctgaaggtgtcagggtggagaaaagattgaagatgtttaatataaaagttcaaaaggcattgactcttcaacaaacttttccaccgaaacattcctgttccttgcctgcgcttttgagaactcgatggcagaacaaattcttcatgagacacttcagaactctcaggcgcaggtcagcagtgtccaggaagtcctctggaaccgtaaaaggatcattaaatcaaaggaggaaatgcaggccactactacaatcctcaaatgaagtggagtcaggacaaaatgtgacagtttcagttgagaaagaaaaaatggactcgcagacttcgttgcaggaacctaatattccgaaagatgatattgatgatatttttgaatcctttggactttaagtttttcacagtgatcatgtggacaatttttgtagccgcattcagaaaccctccagccaaaaaatactattaaataaaaattccgttc

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