LOCUS       NM_001007352            1603 bp    mRNA    linear   VRT 24-NOV-2018
DEFINITION  Danio rerio ring finger protein 24 (rnf24), mRNA.
ACCESSION   NM_001007352
VERSION     NM_001007352.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1603)
  AUTHORS   Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I,
            Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and
            Bobe J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1603)
  AUTHORS   Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M,
            Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD,
            Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov
            GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and
            Hertzano R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1603)
  AUTHORS   Briolat V, Jouneau L, Carvalho R, Palha N, Langevin C, Herbomel P,
            Schwartz O, Spaink HP, Levraud JP and Boudinot P.
  TITLE     Contrasted innate responses to two viruses in zebrafish: insights
            into the ancestral repertoire of vertebrate IFN-stimulated genes
  JOURNAL   J. Immunol. 192 (9), 4328-4341 (2014)
   PUBMED   24683187
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC085525.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC085525.1, CT616285.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA4476758, SAMEA4476808
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1603
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="1"
                     /map="1"
     gene            1..1603
                     /gene="rnf24"
                     /gene_synonym="zgc:103462"
                     /note="ring finger protein 24"
                     /db_xref="GeneID:492480"
                     /db_xref="ZFIN:ZDB-GENE-041114-40"
     exon            1..324
                     /gene="rnf24"
                     /gene_synonym="zgc:103462"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    287..289
                     /gene="rnf24"
                     /gene_synonym="zgc:103462"
                     /note="upstream in-frame stop codon"
     exon            325..474
                     /gene="rnf24"
                     /gene_synonym="zgc:103462"
                     /inference="alignment:Splign:2.1.0"
     CDS             332..781
                     /gene="rnf24"
                     /gene_synonym="zgc:103462"
                     /codon_start=1
                     /product="RING finger protein 24"
                     /protein_id="NP_001007353.1"
                     /db_xref="GeneID:492480"
                     /db_xref="ZFIN:ZDB-GENE-041114-40"
                     /translation="

MTSDLQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKELYAYKQVIQKEKVKELNLHEICAVCLEEFKQKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQQQSMSEPIAPTQQHLPGVENLV"

     misc_feature    557..718
                     /gene="rnf24"
                     /gene_synonym="zgc:103462"
                     /note="RING finger, H2 subclass, found in RING finger
                     protein 24 (RNF24) and similar proteins; Region:
                     RING-H2_RNF24; cd16675"
                     /db_xref="CDD:438337"
     exon            475..517
                     /gene="rnf24"
                     /gene_synonym="zgc:103462"
                     /inference="alignment:Splign:2.1.0"
     exon            518..559
                     /gene="rnf24"
                     /gene_synonym="zgc:103462"
                     /inference="alignment:Splign:2.1.0"
     exon            560..639
                     /gene="rnf24"
                     /gene_synonym="zgc:103462"
                     /inference="alignment:Splign:2.1.0"
     exon            640..1592
                     /gene="rnf24"
                     /gene_synonym="zgc:103462"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

aaacgaccaccacatgcagtcgtatatgaggagcacacacaaacttcactctagtctcaagacgcccgtggatcgcttttactttctgtttacgtgcagcggtgaactcccagctcgcgatgcctctgtttatgtaggcttgtgttgatatgttaataacgcgctcggatttatgctgattaaaagacgtgactgatttatttatggtcgctccttagaataaagtagaggttttgcatcgcggaggcgctgaatttgagccttttcccatcagttttggggtttgtgatcgagcaggagggaggagtggcggagaaacggctggttatccatgacctcagatttacagcattacagtttcaggatgccgaatatcgggttccaaaaccttcctctcaatatctacattgtcgtctttgggacggccatattcgtcttcatcctcagcttactcttctgctgctacctaattcggttacggcaccaggcacacaaagagctctatgcatacaagcaggttattcaaaaggaaaaggtgaaagaactaaacttgcatgagatttgtgcggtgtgtttggaagaattcaagcagaaagatgagctgggaatctgtccgtgtaaacatgcctttcacagaaagtgccttattaaatggctggaggtgaggaaggtttgcccgctgtgcaacatgccagtcttacagctggcgcagcagcagagcatgtctgaacccattgccccaacacagcaacatctgcccggggtggagaacctggtctagaaccttctacaaatgtgactgccactactttcacactccctcctgtacaggtacatgctcgtatccaaggacagactgcaggattggcccacggtgacctgtggcctgcaaatgctcaagtcctgccttggtggctttataaaaggattataaaggatctccaaattacaataatagatgatttactcaatctgtcttatttggatttagcttttttcccctgtgggatcatgaagaagagtttaagtaaccgttccacgccaaagcacttttgttgaggataccagtgagaggcaaaacaggacttaaaaacagcattaaacacattaagataatctacagttttttaacaaacttttttttaaacaagcactttacacaaaactcaaacctaattgcttgtgatagtagcaagatcttgttttatattttataatttgaaactttttttataaaggtgatgtacgcagagccacagagcaaagtaccattggttttactttgattagagagggttacgtttatactgtatattaaagggacagcagctctccaatgtgtatatgtttgtttgtttgtttgactgtttgtgcatcgatggccaaaacaaatgtgaatgcagagtttgtcttattagggtcacgatctgacccagcagtatttaatctgtgttctgtggatgtctttatattgaaaatgctttttaaactgagggctgtgttaaatacacattcacacacacacacaaacacacgtcgactgctttgagttcaaggctgtacttgataagaatctgaaactaaccaaaaaaaaaaaaaaaaa

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