GGRNA | Results

Matches are highlighted with green background. Overlapping matches are dark colored.

Danio rerio argonaute RISC catalytic component 3a (ago3a), mRNA. (3683 bp)

db_xref="CDD:465134" misc_feature 1218..1370 /gene="ago3a" /gene_synonym="eif2c1; eif2c3a; sb:eu275; sb:eu416" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1371..1733 /gene="ago3a" /gene_synonym="eif2c1; eif2c3a; sb:eu275; sb:eu416" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

Synonym: eif2c1; eif2c3a; sb:eu275; sb:eu416
NM_001423197.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio argonaute RISC catalytic component 2 (ago2), transcript variant X1, mRNA. (9676 bp)

misc_feature 494..718 /gene="ago2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 746..898 /gene="ago2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 899..1261 /gene="ago2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

XM_009294368.5 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio argonaute RISC catalytic component 3a (ago3a), transcript variant X3, mRNA. (5450 bp)

N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1183..1335 /gene="ago3a" /gene_synonym="eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1336..1698 /gene="ago3a" /gene_synonym="eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

Synonym: eif2c1
XM_009292707.5 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio argonaute RISC catalytic component 3a (ago3a), transcript variant X2, mRNA. (5477 bp)

Synonym: eif2c1
XM_068213996.2 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio argonaute RISC catalytic component 3a (ago3a), transcript variant X1, mRNA. (5498 bp)

Synonym: eif2c1
XM_068213994.2 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio argonaute RISC catalytic component 3b (ago3b), transcript variant X1, mRNA. (8017 bp)

gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1177..1539 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

Synonym: ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3
XM_005159456.4 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio argonaute RISC component 4 (ago4), mRNA. (2729 bp)

ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 625..777 /gene="ago4" /gene_synonym="eif2c4; fd14f04; wu:fd14f04" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 778..1140 /gene="ago4" /gene_synonym="eif2c4; fd14f04; wu:fd14f04" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

Synonym: eif2c4; fd14f04; wu:fd14f04
NM_001252559.2 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio argonaute RISC catalytic component 2 (ago2), mRNA. (2941 bp)

misc_feature 518..742 /gene="ago2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 770..922 /gene="ago2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 923..1285 /gene="ago2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

NM_001302222.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio dicer 1, ribonuclease type III (dicer1), transcript variant X6, mRNA. (9831 bp)

misc_feature 2260..2526 /gene="dicer1" /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 3028..3396 /gene="dicer1" /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209"...

Synonym: fc39d11; fc74b05; wu:fc39d11; wu:fc74b05
XM_073926974.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio dicer 1, ribonuclease type III (dicer1), transcript variant X4, mRNA. (9948 bp)

misc_feature 2377..2643 /gene="dicer1" /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 3145..3513 /gene="dicer1" /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209"...

Synonym: fc39d11; fc74b05; wu:fc39d11; wu:fc74b05
XM_073926973.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio dicer 1, ribonuclease type III (dicer1), transcript variant X7, mRNA. (10024 bp)

misc_feature 2453..2719 /gene="dicer1" /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 3221..3589 /gene="dicer1" /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209"...

Synonym: fc39d11; fc74b05; wu:fc39d11; wu:fc74b05
XM_073926975.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio dicer 1, ribonuclease type III (dicer1), transcript variant X5, mRNA. (9828 bp)

misc_feature 2257..2523 /gene="dicer1" /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 3025..3393 /gene="dicer1" /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209"...

Synonym: fc39d11; fc74b05; wu:fc39d11; wu:fc74b05
XM_021467115.3 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio dicer 1, ribonuclease type III (dicer1), transcript variant X2, mRNA. (9752 bp)

misc_feature 2181..2447 /gene="dicer1" /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 2949..3317 /gene="dicer1" /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209"...

Synonym: fc39d11; fc74b05; wu:fc39d11; wu:fc74b05
XM_005158666.6 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio dicer 1, ribonuclease type III (dicer1), transcript variant X1, mRNA. (9749 bp)

misc_feature 2178..2444 /gene="dicer1" /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 2946..3314 /gene="dicer1" /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209"...

Synonym: fc39d11; fc74b05; wu:fc39d11; wu:fc74b05
XM_005158665.6 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio dicer 1, ribonuclease type III (dicer1), transcript variant X3, mRNA. (9945 bp)

misc_feature 2374..2640 /gene="dicer1" /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 3142..3510 /gene="dicer1" /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209"...

Synonym: fc39d11; fc74b05; wu:fc39d11; wu:fc74b05
XM_021467114.3 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio dicer 1, ribonuclease type III (dicer1), mRNA. (9600 bp)

gene="dicer1" /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05" /note="propagated from UniProtKB/Swiss-Prot (Q6TV19.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 2797..3165 /gene="dicer1" /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209"...

Synonym: fc39d11; fc74b05; wu:fc39d11; wu:fc74b05
NM_001161453.3 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio argonaute RISC catalytic component 3b (ago3b), mRNA. (3062 bp)

gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1161..1523 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...

Synonym: ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3
NM_001160028.1 - Danio rerio (zebrafish) - NCBI - UCSC

Data Export:

Debug Info:

0.000 | 0.000 | search_start;
0.078 | 0.078 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Danio rerio (zebrafish)?to=0&format=json
0.126 | 0.048 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Danio rerio (zebrafish)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.128 | 0.002 | cgi_end;

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]

Summary:

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