2024-09-28 08:12:36, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_026840839 7794 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis rho guanine nucleotide exchange factor 17-like (LOC100185174), transcript variant X4, mRNA. ACCESSION XM_026840839 VERSION XM_026840839.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020167.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7794 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="2" gene 1..7794 /gene="LOC100185174" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns" /db_xref="GeneID:100185174" CDS 118..7233 /gene="LOC100185174" /codon_start=1 /product="rho guanine nucleotide exchange factor 17-like isoform X4" /protein_id="XP_026696640.1" /db_xref="GeneID:100185174" /translation="
MPDKNENAKDENRSIIDNNRRLLARDMLSSVLPRSRGTSPARHTRSRRTGTDTTDGLKPTKVTGGGSPASVKKRLGARSESPIISEGGEVTIPGEEEFNIMFDTVRKLSRDSETMSINNYSKLVDAFSKTTGDAKRSEIKLKQTLNNIGGNHFATCEGKRANYNHTAESDRSRIVPDYITRVNESSKPNFASAKPSVKSAVQQKQEPDRAMAKRRRERSGRGARRQHLRLENGTSTADDSAVGQANQANAIKYLPTYIQPVVETPRQQHRTADYDIFQHKKHTYTTGSTANGRSSRKSFVDRQVARIGDNRLSSSSSSDNSSVEDSSTRSSTRPAKSVQDISDADSESQPGRRTRRNRLRNRANQQRPIHTPDYVIATPPRKVSDHGVGTSDISRQLANKVSSVNDRSPKTSEASDYMGKQYQSREKRPSVDSVGKISTSPRNFQPTTVQNLVEGRIDHSTPNEATVVPKVQPKLGRETGRRESREKLIISGKQISAPLEEVQKEGSPTQINSTNQSPNNPVSDVAVQSNKVTSSPSIDEHDTAAGRKTAIEKNGVQLPQYKTKPVGNLRELFNSQEQLKTKFGHAFNSSKPSEQVNSKTDQAKRDRRTSLNEADADADNEQVVHSQPMLKARKVSEDYWPRDEVTEKLLQSRSTHSSISSSKPSLMPVSEAPTSTEQSNEVHAMKESLGHKQSLVTVMHLPKETNLSDPQVLSSEPMFVKGSPCDKLKHNQDDSVLHVADVINAKQTTERNAAAQTPRTLVRGHSNSSEAQRNSSSSSNACHKHTRSQSTDSTASNPEAYTTLTKQVVSHKPPPTPVWSFEETDRKLRQYDKTLPSDASLNNTTVCNGTTTDSWASSNDAAVLQSELNDLTPTLRDISINGSPLYVAPKFASYSANKPASVQVSPHVRTTQAPVVCDDMARHAVVTSSSASGVSNNSSTISTSSRKSSVVSLSTALRKGSANSACSPPPPSTVEIDEGCYTEEDVTAKGSPMSAPFAHPGFTLGEDEILDKSEFQNGPSNNNRRRRKYSAAGHSGSDVSNESVRSLSDPIPVRGKDLVGTEDGAVDGSYIVSLNQHDTAETVPDRNSVSDLSLYSENTSLPDDASDKLVNEPEKRKEQEDHTLAVQGTKTGGKTIKKKSFSDPNANAVLTAGLIGSMNAEMESPALYNSSSEPALSEQTDELGELNQFHIYQSTKHSGNHTKDNVLPSSGIGDMTHSIEEMSKLLLAEHTVMSPRSARRNMTLKSRKRAQIEQMKSKETVPLNNFIQNELHIQIAASVDPVVEDIFEKEEEQFQQMYESMTGAIPEKMPVVHTRSCSEPVPMDKLENRLVQKASERGRRAGIVQAPSLNDVMGDNRIPPPTESPLKHTKQLSNSVDRIHSATLPRAAGSRGLGFQVDKLDMRKHVVRNLLETEESYVNSLRILYETYFKPLKQPENHVVCEPRLVDEMFFQIPQILQHHEKFFENVEECFENWDPESVKIGDVFIQSFNKDMLLEAYTSYIKNFLNAREAVTIATQAKTAFKLFLEQCQRENRDKQGLSDLMIKPVQRIPRYELIIKDLLKHTPEDHADRTSLLIAQREIHALSVQMNKGEKEAEAAERHAKLLQDIEQIIEGCMEISGITKRRFLRQDICIELKSGNKKDRSLWLFNDLLMCTTSKKGRTGSLRRSSMNLWSMTTDRIMVDFTSKYKFLWKFPLEDVELLKGSTGPNRQVTEKQLQQLRCDHDLLIQMEKLASDLSTSHLLLDEAVKDLLSQTSQKIIEKQQMTMHGVGLPGRLEIGISTPDGMKMFQFEFQSEDNKTQFEVLFWNAKKNFNPQKSRWDPTFMKAIPISKTRNGMQFSCAAPNVDTSPGTREVWVCNTDGYVGQICFLSIEPETLPTKSITVCNSKICCIAQVPTWDRKLVPTNTFVNDISKAPLIHLPHGRRRSSTHSNPAHKIIAWDDTDDSDEDNTSPFSTNSNYSSYSMSPYSTNNSMSNFDISLSTNDGSLLGDHGSRAPTNSLMHALLGSGAFKKDSDGSTLHGSLEDLLSDSTSSMTKHPPLAGKNSMGSKMLSNHGSMWLGTEDGKIKVYSTAEAIKGNKQCVHLNHNASVQCILHRDGQVYVALSNGDLIIYFRDKATGHWDFDNKKSISLGTSPNPITRMLVVNEKELWCGCQNQIMILDMKTHNVKSFFAVSQDSKRQIFCMVSSGYGVWVALDRRSQIKLFHSVTHDLLAEVDVSHPVSKMLASSDAIIRQHKAACLRITSLLVCKDLLWVGTSAGVVLTLALPSVTASTSSLSLPIIPQGLTYGHTGHVRFITSVDVMEKETPPQRGSRRSSSTKRRSSSASTSSQTRSNTIIISGGDGYEDFRMNSASEAAGREDSTNHLLLWKT"
misc_feature 4324..4884 /gene="LOC100185174" /note="Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160" /db_xref="CDD:238091" misc_feature order(4342..4344,4354..4356,4654..4656,4735..4740, 4747..4752,4756..4761,4768..4773,4780..4785,4792..4794, 4870..4872,4882..4884) /gene="LOC100185174" /note="GTPase interaction site [polypeptide binding]; other site" /db_xref="CDD:238091" misc_feature 4987..5394 /gene="LOC100185174" /note="PH domain; Region: PH_19; pfam19057" /db_xref="CDD:465965" misc_feature <6280..>7014 /gene="LOC100185174" /note="WD40 repeated domain; Region: WD40_2; pfam19056" /db_xref="CDD:465964" ORIGIN
cacaggtatttcgatgtctcaaaacctttgtaattattttatctggttaactaagcatacgtggaatgctgagtgattgtttcttacatcattgtgaagtagagcagagttcgcaacatgccagacaaaaacgaaaatgccaaagatgaaaacagaagtataatcgacaacaaccgacggttgctagctcgggatatgttatcttcggttctgccacgttctcgtggaacttcgcccgctagacacactcgttctcgtcggactggaaccgacacgaccgatggactaaaaccaaccaaagtcacgggcggaggcagtcccgcctctgtcaagaagagattgggtgctcgcagtgagagtccgatcatcagcgaaggtggtgaagtgaccataccgggggaagaggagtttaatatcatgttcgacactgtgaggaaactgtcccgagattctgaaacaatgtcaatcaataactattcaaaactcgttgatgctttcagcaaaacaaccggtgatgctaaaagaagtgaaataaagttaaaacaaacactaaacaacatcggtggcaaccatttcgccacttgtgaggggaagagagctaactataaccacacggcggagagcgatcgatcgagaatcgtcccagattacatcacgcgcgtgaatgaatcaagcaaacccaattttgcttcagcgaaaccttctgtcaagagtgcagtgcagcagaaacaagaacctgacagagccatggctaaaagacgaagagagagaagcgggaggggagccaggcgacagcacctacgattagaaaacggtacatcaactgcagatgacagtgcggtaggccaagccaaccaagcgaatgcgataaagtacttgccgacgtatatccaaccagttgtagaaactccgcggcagcagcacaggactgcggattacgatatttttcagcacaagaaacatacgtataccacaggttcaactgcgaacggcagaagttcaagaaaaagctttgttgatcgccaagtggctcgtatcggagacaataggttatcgagtagcagcagcagtgacaatagcagcgtcgaggattccagtactcgatcgtcgacgcgaccagcaaaaagtgtacaggatatttcggacgctgattcagaaagtcagcccggaagaagaacaagaagaaatcgacttcgtaaccgagcgaatcaacaacggcctattcatacgccggattacgtcatagcaactccaccgagaaaagtttcagaccacggagttggaacttccgacattagtagacagcttgccaacaaagtgagctcagtgaacgatcggtcgccgaaaacttccgaggcgagtgattatatgggaaagcagtatcagtctcgcgaaaaacgcccatcggttgattcggtcggcaagatatcaacttcaccgagaaactttcagcctactaccgtgcaaaacttggtggaaggtagaatagatcattccactccgaacgaagctacggtcgtgccgaaggtacagcccaaattgggacgagagaccggtcgtcgcgaatctcgggaaaagttaatcattagtggaaagcaaatatcggcccccttggaagaagtgcaaaaggagggttcaccaacgcaaataaatagcacaaatcaatcaccgaataatccagtgtcggatgtggcagtgcaaagcaacaaggtaacttctagtcctagtattgatgagcatgacaccgccgcaggccgtaaaactgcaatagaaaaaaacggcgtacagctaccacaatacaaaacaaagccagtcggcaatctaagagaactttttaactcacaggaacaactgaagactaagtttggccacgcattcaattctagcaaaccttcagagcaggtcaactctaaaaccgatcaagcgaaacgagataggagaacgtcattaaatgaggctgacgcagatgctgacaatgaacaagtggttcacagtcaaccaatgctaaaggcacgtaaagttagcgaagactattggcctcgggatgaggtgactgaaaaacttttgcaaagtagaagtacccattcatcaataagcagttcaaagccatcgctgatgcctgtaagcgaggctcctactagtactgagcaatcgaatgaagtgcatgcaatgaaggagtcgctcggtcacaagcagtccttggttaccgttatgcacttaccaaaagaaacaaacttgagtgacccccaggttttgtcaagtgagccaatgttcgttaaagggtcgccttgcgataaattgaaacataaccaagacgattctgttttacatgtggcggatgtgatcaacgcaaaacaaaccactgaaaggaatgccgcagcacagactccacggacattggtaagaggtcattccaacagctcagaggcgcaaaggaattcttcaagttccagcaatgcttgccacaagcacacacgctcgcagagcactgatagtacagcttctaaccctgaagcatacactacgttgacgaagcaagttgtttcgcataagccgcctcccactccagtgtggagctttgaagaaacggacagaaagttgagacagtatgataagactctcccaagcgatgcctcgctaaataatacgactgtttgtaatggcacaactacagactcttgggcatcaagtaatgacgcagcagtattacaatcggaactaaatgatcttactcctactttacgagatatttctatcaacggttcaccgttatatgttgcgcccaagtttgccagctacagcgccaacaagccggcgtcggtgcaagtatcacctcacgttcggactacgcaagcccctgtcgtatgtgatgacatggcgcgtcacgcggtggttacttcgtcatcggcttccggtgtaagtaataattcctcaacaatttccacctcttcgagaaagagcagcgtcgtttcactttctactgcattacgcaaaggcagtgcgaacagtgcgtgtagcccgccaccgccgagcacagtggagatagacgagggctgctacacagaagaggacgtcacagctaagggctctccaatgagcgcaccgtttgcccatcctggctttacacttggcgaggatgaaattctggataaaagtgagtttcaaaatggcccttctaacaacaacagaaggcgaaggaaatactctgccgcgggacacagtggttcagatgttagtaatgaatccgttcgttccttgagtgacccgattccagtccgtggcaaagacttagtagggacggaagacggtgcagtagacggcagttatatagtttcattaaaccaacatgatacagcagagactgtaccggatcgtaattctgtcagtgatttgtcattatatagtgagaacacgtccttgcccgatgatgccagtgacaaattggtcaatgagcctgaaaaacgtaaagaacaagaagaccacacacttgctgttcaaggcaccaaaacaggtggaaagaccatcaagaaaaaatcctttagcgatccgaacgccaatgctgttttaacagccggtttaattgggagcatgaatgcggaaatggaaagccctgctctgtacaactcgtcaagcgaaccggctttatcagaacaaactgatgaacttggcgagttgaaccagtttcatatttaccaatctacaaagcactccggaaatcatacaaaagataacgttctcccgtcatctggtatcggggacatgacacattcgattgaagagatgtccaaattattgctcgccgaacacactgttatgtctccaagaagtgcccgtcgaaacatgacactaaaatcgcgcaaaagagcgcagattgaacaaatgaaatccaaagagactgttcctctaaacaacttcatccagaacgaacttcacatccaaatagcagcatcggttgatccggtggtggaggacatttttgaaaaagaagaggagcagtttcagcagatgtatgagagcatgactggagctatccccgaaaagatgccagtcgtccatacacgttcgtgtagtgaacctgtaccaatggacaaactcgaaaatcgtcttgtacaaaaagcatccgaaagaggaagacgcgctgggatcgtacaagcaccatcccttaatgatgtaatgggagataacaggataccaccaccaacggaatcgcccctcaagcacacaaagcaactttcaaactcggtggaccgtattcattcagctaccctacctcgcgctgctggcagcagaggattaggattccaagttgataaactggatatgagaaaacatgtggtgagaaatttgctggaaacagaggaatcgtacgtcaactcgctacggattttatacgagacttacttcaagccactgaaacaaccagaaaaccacgtcgtatgtgagccacgtcttgtggatgagatgtttttccagataccccaaatactgcagcaccacgaaaagttttttgaaaacgttgaagaatgttttgaaaactgggacccagagtctgtaaaaattggcgatgtcttcattcagtcgttcaataaggatatgctactggaagcctacaccagttacatcaagaactttttgaacgccagagaagccgtcaccatcgctacgcaagcaaagaccgcattcaagctcttcctcgagcaatgccagcgagagaatcgcgacaaacaaggtctgtcggacctcatgattaaaccagttcaaagaataccacgatacgaactcattataaaggatctattgaaacatacgccagaggaccatgcagacaggacaagtttactgattgcacaacgtgaaatccatgccctctcagttcaaatgaacaaaggtgaaaaagaagccgaggcagctgaaaggcacgccaaacttctgcaagacattgaacaaatcattgaagggtgtatggagatatctgggattacaaagcgtcggttccttcggcaagatatttgcatagagctaaaatccggcaacaagaaagacagaagtctgtggctcttcaatgacttgttgatgtgtacgacgtccaagaagggaagaacaggttctcttcgtcgtagctccatgaacttatggtccatgacaactgataggatcatggtggattttacgagcaaatacaaatttctttggaagttcccattggaagacgttgaactgctgaaaggcagtactggtccaaaccgccaagtcaccgaaaaacagctgcaacaattaagatgcgaccatgatctattgatacaaatggaaaaacttgcatctgatttatcaaccagccatctgttactggatgaagcggtgaaagatttgttgagtcaaaccagccagaaaataattgagaaacaacagatgacgatgcacggggttggtctaccaggacggttagaaattggaatatcaaccccggatggtatgaagatgtttcaattcgagtttcagagcgaagacaacaagactcagttcgaagttcttttctggaacgcaaagaaaaatttcaacccccaaaagagccggtgggacccgacgtttatgaaggcaattcccatcagcaaaacgcgcaatggaatgcagttttcatgcgcggcgcctaacgttgacacgtctcctggtacaagggaggtatgggtttgcaacactgacggatacgttggacagatttgcttcctcagtattgaacctgagacccttccaacgaagtcaataacagtttgcaactcaaaaatctgctgtatcgctcaagtaccgacgtgggatagaaaactagttcccaccaacacgttcgtcaacgacatttccaaggcccccctcattcacttaccccacggtcgtagaagatcatcgacccacagtaaccccgcccacaagatcatcgcatgggacgataccgatgattcagacgaggataacacaagccctttcagcaccaacagcaactacagcagttacagtatgagcccgtacagtacgaacaacagcatgtcaaacttcgatatttctctgtcaacgaatgacggcagtctccttggcgatcacgggtcacgtgcacccacaaactcactcatgcatgcactgctgggcagtggtgcgttcaagaaggatagtgatggttcgacgctccatgggagcttggaagatctcttgagtgacagcacatcttctatgacaaaacatccacctttagctgggaagaacagcatgggtagcaagatgttgtccaaccatggttccatgtggttgggcactgaagacggaaaaatcaaagtgtactccaccgctgaagccatcaaaggcaacaaacagtgcgtacatttgaaccacaacgcatcggtccaatgcattctgcatcgggatggtcaggtatacgtagctttaagcaacggagatctcatcatatattttcgtgataaagcgactggtcactgggactttgacaacaaaaagagcatttcacttggtacttccccgaacccgataacaagaatgttggttgtaaacgaaaaggaattgtggtgtggttgtcaaaaccaaatcatgatacttgatatgaaaactcacaacgtgaagtcgttcttcgcagtcagccaagacagcaagcgacaaatcttctgcatggtctcttctggttatggagtctgggtcgccctcgatcgaagatcgcaaatcaagcttttccacagtgttactcacgacctgttggcagaggtggatgtctcgcatcctgttagcaagatgcttgcgagttccgacgccatcatccgacaacataaggctgcgtgtcttcgcatcacttctttacttgtatgtaaggacctcttgtgggtaggcacgagcgctggagtcgtcctcacgttggcgctaccgagcgttacagccagcacttcttccctttcgctaccaattataccacagggtctgacgtatggccacaccggtcacgtgcgcttcattacgtcagtagatgtcatggaaaaggaaacccccccgcaaagaggatcacgaagatcatcatcgacgaagcggcgatcctcatctgcatctacatccagccaaacccggtcaaacacgatcatcatcagcggaggagacggatacgaagacttccggatgaactcagcaagcgaggcagctggaagagaagacagcacgaaccacttgttgttatggaagacctagcgtcattaattcatctacaataagttgttagacgtaatttcactgtggagcagctgcgtcatggcaggccaggatttaaaccactagaggtagtggtgggcacaaacttgtaactttctaagccattatcgtgacctgcttcccttggttgggtagttacatacgttcttcgttcatttcttatttattttacaacggatgcggttttggatgacatcatgagagtactacctgcttcattcctcgaggatgactggatttaaaccacttctatcctgtttttttttctattcacatcgtcaccttggcatgaccttgcacttcagcggttcactccgcacgagtaacaaatgcagccgctacctaatctattctgtaacttttgatttgttcttggtttgttcgtttactatgattttatgtattttaaacaggtttgtttttgcgttttacttctagactgattcatttttatcattttcgcgtatctttgttcttgtattcgcaatggccgttgaaaattcactaaatctatctgaaaatatacaaatttgaatgtaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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