2024-07-02 04:00:37, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS XM_026833761 2358 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor hox2 (hox2), transcript variant X2, mRNA. ACCESSION XM_026833761 VERSION XM_026833761.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020166.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2358 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="1" gene 1..2358 /gene="hox2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:619238" CDS 344..2302 /gene="hox2" /codon_start=1 /product="uncharacterized protein hox2" /protein_id="XP_026689562.1" /db_xref="GeneID:619238" /translation="
MIRETGFINSQPTFAECLNIVSSGIEDNASDVYRKSPIAAAFDRVQQKEETIADSTGSSLHSDCSPTSSRPVSLAFSPISTVSNSPRGKMGFVGPQNNSTVPCASTSATSQSHHYQQSHMSSEYIQGSNFRPHNPPYAPRIQEPTHFDPRFSYRPQFDAPHSAYEEPQDHGAFTLAPPDPPYRGIPSYPTAHVYPVDPFLQYQRSDYDVIRDEQCPDFPWMREKKSGEKTSEGRRVRPAGASRRLRTAYTNTQLLELEKEFHYNKYLCRPRRIEIATLLDLTERQVKVWFQNRRMKHKRQQLQQSQKDNDDSDVTSADEKNDVKETGSDVESDKNDDVTSLEASESGNGKSRHSSSDDVTDDESKVAVPSSPVVKREKYKKSEKKFENIQCGTESAKSSVHDAAVSENVKSEEVLSPKDETVDDVFNTSQTSHVTTSVTTRCHLHMKCSVDHRNFDNNWQHSVNESTKTADQAVTCTHPMNMEHSFPQATFMQRHHTTTANGMYKPLGVITQQDEWHSHTLQGKTHNNEYAYTTQHKHEVPHPTYPPWKPPPQPITHNYHSKPFPLFDSNVNSYNYNNGFDSSFRPSKYRPFIPDNGYSPTHDVNRQQIPHPEWKAPMGKYPKPYTPQYESHGVNISQTAGLLSNAQKLLDL"
misc_feature 1070..1240 /gene="hox2" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" ORIGIN
gttacgcaataatggcgtttgcgacgtgatactttcatccattttgttgtgcgttagttttattttaattgtatctatttgttaactatatgaaatttgttcataatcttgattgcagtgtcattgttatgatgcagccatattatttcacaaatcaaatttggacgtaacaatcagtgtattatgaagtaactttactttttaagtatgtatgcgacaacaatattattttaatatttcatttatgcgacaacaatctcgattcatgacaagtacaaatgtgcaattgtgacgtatttacatcagacgttaagttaggaaagatgtgagccaggatccagagatgattcgcgagactgggttcatcaattcgcaacctacgttcgcagagtgccttaatattgtaagttctggtatagaggacaatgcttctgacgtttatcgaaagtcgccgattgcagccgcgtttgatcgcgtacaacagaaggaagagacaatagcagattccacaggcagcagcttgcacagcgactgcagcccgacgtcttcgcgaccagtgtcgctcgccttctcaccgatatcgacggtttcgaactcgccccgcgggaaaatgggcttcgtcggcccgcagaataactcaacagttccgtgcgcttcaacttcagccacaagccaaagtcatcactaccaacaaagtcatatgtcatcggaatatattcagggttctaactttagaccccataacccaccctatgcaccaaggatacaggaacctacccacttcgaccccagatttagctaccggccccaattcgacgcccctcacagtgcatacgaagaaccccaggatcacggagcgtttacgttagccccacctgacccaccctacaggggaatcccctcttaccccacagctcatgtgtacccagtggatccattcttgcaatatcaaagaagtgattatgacgtaataagagacgaacaatgcccggattttccatggatgagagaaaagaaatctggggaaaaaacgtcagaaggaagaagagttcggcccgcgggcgcatccaggagactacggactgcttacaccaacacccaactgctggaactagagaaggagtttcattataacaaatacctttgccgaccaagaagaattgaaattgcgaccctgctcgacctgactgagagacaggtcaaagtttggtttcagaaccgtcgaatgaaacacaaacgtcaacaattacaacaatcacaaaaagacaatgacgattctgacgtaacaagcgccgacgaaaaaaatgacgtcaaagaaaccggtagtgacgtcgagtcggataaaaacgatgatgtcacttcccttgaagcatcggagagtggaaatggcaaatcacgtcattcttcaagtgatgacgtaactgatgacgaaagcaaggtagctgtcccttcctccccagtcgttaaaagagaaaaatacaaaaagtcggaaaagaaatttgaaaatattcaatgcggtactgagagtgccaagtcatcggtgcatgacgctgcagtttccgaaaatgtcaaaagcgaagaagtattaagtcccaaagacgagacagttgatgacgtgtttaatacgtcacaaacctcccacgtcacgaccagtgttaccacacgttgtcatctgcacatgaagtgcagtgttgaccacagaaattttgacaataactggcaacactctgtgaatgaaagcacaaagacagcagaccaagcagtcacatgcacacatcccatgaacatggaacactcctttcctcaagcaacgttcatgcagcgccaccatacgaccactgccaacggaatgtataaaccgctaggtgtcataacgcagcaggacgaatggcatagccacacactgcaaggcaagacacataacaatgaatacgcttacaccactcagcataaacatgaagtgccccatcccacctaccccccatggaaacccccaccccaacccatcacccataactatcattcaaaacccttccctttattcgatagcaacgtaaactcttacaactacaacaacggtttcgactccagctttcgcccaagtaaataccgacccttcattcccgataacgggtattccccaactcatgacgtaaaccggcagcaaatccctcaccccgaatggaaagcccctatggggaagtaccccaaaccgtacacccctcaatatgagagccacggtgttaacatatcgcaaacagctggcttactgagcaacgctcagaaactgctggatttgtaatttatatcatttgtactaatcgttgtgtgacgtcagcaataaaagcgctaaacata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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