2024-09-28 08:14:53, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_018814644 2015 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis 4-trimethylaminobutyraldehyde dehydrogenase (LOC100175707), mRNA. ACCESSION XM_018814644 VERSION XM_018814644.2 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020178.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_018814644.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2015 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="13" gene 1..2015 /gene="LOC100175707" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 30 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 195 samples with support for all annotated introns" /db_xref="GeneID:100175707" CDS 7..1569 /gene="LOC100175707" /codon_start=1 /product="4-trimethylaminobutyraldehyde dehydrogenase" /protein_id="XP_018670189.1" /db_xref="GeneID:100175707" /translation="
MLSFRLQQLRLLACNSLNKSHRNIIRSVASGTYNVTTPLNFIGGQRVETEESLSIIDVIEPATGKVMCQMHECGATDVNNAVNAAKQAQLEWGKLSGFERGKILSKSSVLLKQKQEEIARMEVYDTGKPIQEARVDVQTAIDSIEYFSGIASTLCGQHFSLPNGSFGYTRREPLGVVAAIGAWNYPIQIAAWKAAPALATGNAVVCKPSQFTPLTAVALAEVFIEGGLPSGLFNVVQGAGETGNHLTRHPDVAKVTFTGSIETGSKVMQNCAADIRHVTLELGGKSPLILFGDCDITNAVNGALMANFLSQGQVCSNGTRVFIQDDIYDEVVTMLVERTLGIKHGDPHHEHTKMGAMMNEEHAHKVMGFIERAKKEGAEVLCGGELVQMEDPVLRGGSYISPCIIRPSDSMEISREELFGPVMNVYSFKTEDEVIRRANDSKYGLASGVFTKDIQRAHRVAASMQAGSCYINNYNIFPIEMPFGGYKKSGLGRENGTVTVDYFTQLKTVYVEMNDVECSL"
misc_feature 178..1548 /gene="LOC100175707" /note="NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1; Region: ALDH_F9_TMBADH; cd07090" /db_xref="CDD:143409" misc_feature order(292..294,298..300,310..312,319..321,331..333, 340..342,439..441,451..453,472..486,508..510,514..522, 799..801,832..834,898..900,907..909,916..921,1018..1020, 1063..1065,1360..1371,1378..1383,1387..1389,1396..1398, 1402..1413,1417..1422,1444..1446,1450..1452,1462..1464, 1468..1470,1477..1479,1483..1485,1519..1536,1540..1545) /gene="LOC100175707" /note="tetrameric interface [polypeptide binding]; other site" /db_xref="CDD:143409" misc_feature order(544..549,553..558,625..627,721..723,775..777, 781..786,793..795,847..855,949..951,1255..1257,1261..1263, 1453..1455) /gene="LOC100175707" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:143409" misc_feature order(556..558,847..849,940..942,949..951) /gene="LOC100175707" /note="catalytic residues [active]" /db_xref="CDD:143409" ORIGIN
ggtaaaatgttgtcatttagattgcaacaacttcgtttgttagcttgtaatagtttaaataagtcacatagaaacattatacggagtgtggcaagcggcacctacaatgtgacaaccccactcaactttattggcggacaaagagtcgaaacagaagaatctttgtcaataattgatgtcattgaaccggcaacaggaaaagtaatgtgccagatgcacgaatgtggagctactgacgtaaacaacgcggttaatgctgcaaaacaagctcaacttgaatggggaaaactatcagggttcgaaagagggaaaatattgtcaaagtcttctgttttattaaagcaaaagcaagaagagattgctagaatggaggtctacgatacagggaagccaatacaagaagcgagagttgatgttcaaactgctatcgattctattgagtatttcagtggaattgcttcaactctgtgtggccagcacttttcgttgcctaacgggtcgttcggctacacacgacgtgagccactaggtgtcgtagcagcgataggagcgtggaattacccgatacaaatcgctgcgtggaaagccgcacctgcactcgcaactggcaatgcagttgtatgcaagccatcacaattcacccctttgactgcagttgcgttagctgaagtatttatagaagggggactaccctcaggactttttaatgtggtacagggggctggggagacggggaaccacctaacacgacacccagatgtcgcgaaagttacttttactgggagtattgaaactggaagtaaggttatgcagaattgtgccgcagacataagacatgtcacacttgagcttggaggaaaatctccattgatattgtttggagattgtgacatcactaatgctgtcaatggagcattgatggcaaactttttgtcacaaggacaggtatgctccaatggcacacgtgtgttcatccaagatgatatctatgacgaagtagtaacaatgctagtggagagaacacttgggatcaaacatggcgacccacatcatgaacatacaaagatgggagcaatgatgaatgaagaacacgcacacaaagtcatggggtttattgagagggctaagaaggagggagctgaagtgttatgtggtggggaacttgtgcaaatggaagacccagtgttgcgaggtggaagttatatttccccatgtattattagaccaagtgatagtatggaaatatccagagaggaattgtttgggccagtaatgaacgtttattcgttcaaaactgaagatgaagtcatccgaagagcaaatgactcaaagtatgggctggcttctggggtttttaccaaagacatacagcgagcccacagagttgcggcatcaatgcaagcaggtagttgttacatcaacaactataatatctttccaatagaaatgccatttggtggttataaaaagtctggtctgggaagagagaatggaacagttactgttgattatttcacacaactgaaaacagtttatgttgaaatgaatgatgttgaatgttctttatgattaaacaatcgcaatcattctaaatctcctttaaaagtatattgcagtcatatcaaaatttcctaagctgccaaatctacagtattgtactaagatgccatggaataatattataacttataatattggagggccaaaaatggcacacaaaaagccccatatctaaattgtaacttgtttttgcattataatacttgatttacagttttacacgtttaaaacacattgtgctcttttgaacagttctttggtgctgttttctgtgaaaaaatatgaatatattacaacttttacaccatacagcttatattaatgctaaaaaatgaaaataaattgctaatctagaaactgaactagaaatcggctaatctagaaacaaacactgtgctttataaacatgcgagtaaaaatacaaccatttattctgtgctcagtgcaatgttaat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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