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Previous release (v1)
2025-10-30 23:18:19, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_018813081 1104 bp mRNA linear INV 22-OCT-2018
DEFINITION PREDICTED: Ciona intestinalis uncharacterized oxidoreductase
TM_0325-like (LOC100186091), mRNA.
ACCESSION XM_018813081
VERSION XM_018813081.2
DBLINK BioProject: PRJNA187185
KEYWORDS RefSeq.
SOURCE Ciona intestinalis (vase tunicate)
ORGANISM Ciona intestinalis
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
Cionidae; Ciona.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_020173.2) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On Oct 22, 2018 this sequence version replaced XM_018813081.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Ciona intestinalis Annotation
Release 104
Annotation Version :: 104
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..1104
/organism="Ciona intestinalis"
/mol_type="mRNA"
/db_xref="taxon:7719"
/chromosome="8"
gene 1..1104
/gene="LOC100186091"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 1 Protein, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 9 samples with support for all annotated
introns"
/db_xref="GeneID:100186091"
CDS 288..1061
/gene="LOC100186091"
/codon_start=1
/product="uncharacterized protein LOC100186091"
/protein_id="XP_018668626.1"
/db_xref="GeneID:100186091"
/translation="
MAATKRVVLITGSATGIGAETAKGFAKEGASLCITGLPSQKDELAEVAKVCKENGSPHVLEVAADLRKQEDMYLLMNETIKTFGQLDVLVNNAGITVNGDLDQYTSEDFDKIFSVNVKAPTYLTKLAKPHLSKTKGNIVNMCSVVRECHIKNCLLYGMAKASLAYLTKSTAADFAENGIRCNAVSPGCIYGTDILKGILSDEFKQQYFDSCITKLRGRLATKSDVSDLIRFLASDKATMITGEIITIDGGKVLSLKS"
misc_feature 303..1037
/gene="LOC100186091"
/note="NAD(P)-dependent dehydrogenase, short-chain alcohol
dehydrogenase family [Lipid transport and metabolism];
Region: FabG; COG1028"
/db_xref="CDD:440651"
ORIGIN
ttaaaggtgatataatgcgaaacgccaagaacgaagcaggggtatacgattcatcgcatcataagcaagtatagtctatatttcaattagggccgtgggctacacatacagaaatcgccctgtttacaatgcgatcatgaaagatacaagaatttgttccacgcaagagttatacgaagaaggagcggtgtagtcttgcccacaactaaatcgacgaactttgctattgtgcagtttgtctgtctggcatataacgacatttagctaacgtatatataaataataaaatggcagcaacaaaacgagttgttttgataacaggtagtgcgactggtataggtgccgaaactgctaaaggatttgcaaaggaaggagcctcattgtgcatcactgggttaccatcccagaaagatgaattggcagaagttgcgaaagtttgcaaagaaaatggatctccgcatgtattggaagtagcagctgatctaagaaaacaagaagatatgtatttgttgatgaatgaaacgatcaagacgtttggacaacttgatgtcttggttaacaacgcaggaataactgtgaacggggatctggatcagtacaccagtgaggactttgacaaaatattcagcgttaatgttaaagcgccgacttatctaaccaagcttgctaagcctcatctcagcaaaactaaaggtaatatcgtcaacatgtgtagcgtggtgagagaatgtcatataaagaattgtcttctgtatggaatggctaaagcatccctggcttatttaactaaaagtacagccgctgatttcgctgagaacggaataagatgcaatgccgttagcccaggatgtatttacggtacagatatactcaaaggaattctatctgatgagtttaaacaacaatactttgattcgtgcataacaaaactacgaggtcgtctggcaaccaagagtgatgtttcagacctcataaggttccttgcttcagataaggcgaccatgatcaccggagaaataatcactattgacggaggaaaggtgctttccctgaaaagttaagaaaccaagcgcgatttaaatgaatacaacgatttaaaattta
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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