2024-09-28 08:13:19, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_018812490 3039 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis kinesin-like protein KIF9 (LOC108949619), mRNA. ACCESSION XM_018812490 VERSION XM_018812490.2 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq; includes ab initio. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020172.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_018812490.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..3039 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="7" gene 1..3039 /gene="LOC108949619" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 ESTs, 20 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:108949619" CDS 221..2725 /gene="LOC108949619" /codon_start=1 /product="kinesin-like protein KIF9" /protein_id="XP_018668035.1" /db_xref="GeneID:108949619" /translation="
MSSSNKKRVKVYARFRPTSKFSHDNISFDKDGKVINIHARKNVSSEVVNNQLLNWSFRVDGILHNASQDQVYDTVASDMTLNTLEGFNSTLLAYGQTGAGKTFTITGATENYKHRGLIPRAIAQVFRSVEERSDHAVQIQISYFEIYNETMFDLLSTLPESETASTYDSKLTIVEGEDGSVCIKGLSMHQANNEGEALNYLFEGETNRAIASHALNKNSSRSHCIFTIHVRSKSRTESNAKYIHSKLNLVDLAGSERIGKTGSDGLIKREAMYINKSLTFLEQTVIALADKNREHIPFRQTKLTHALKDSIGGKCFTTMIANVYGEASQLEETVSTLRFALRMMRIPVQPAITEHYDPWLLVQEMEKEIMHLKQELEMNNTLANRSQISYDMLSESQIADINKQVRMYLQRKTTEIDVRNLRQMNMVFEQFRNVITEMEQDIKDRFRSKFVLLDKSDSEALIALQKAGIPLDEDGNYLGSTDALPVLTGRSGETGTTQQAAAHGGGKQKHPTSPKRRSGKKSRAGGSPTHRAPISPSLPAPGDHGPKGIKSGAAHSQVVTAQTDGAESTKKDECSVSGELLVDDRSHSRPSTPPPRPVAFENFKKEQGCEIYRILNENKSHLQSKKQIVHNLAHAVNATKHMIDGTRMALERKQNERYEQGEFVNEEGETVIDEEEFQLITQLKNLKQTYRHDYEELRNVKSEIDYCQKLVKQCTQRLVLEFDNWYSESYMQKNGEANPLSWSVPKPGVQHPMRLQLANIPLSSEDEQDKFQRLQETMLGDQEEIAFQNARMRVHRRKVNEQAMNQAQPARRLAGGFIETNVRNKPPNQMSYVM"
misc_feature 242..1249 /gene="LOC108949619" /note="Myosin and Kinesin motor domain; Region: Motor_domain; cl22853" /db_xref="CDD:473979" misc_feature order(266..271,503..526,851..856,971..988) /gene="LOC108949619" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:276814" ORIGIN
acatttgtaagatgcctttgaccgcgcttaccattgctttttggagataaaacaaataaattgtacataaataaaccaacaaaatttttgggaaacactctgggatcaccatagcgaccaccgaagcaagttcaataaatcaattggcctgtacaaatattcggttttaaatgtaagaaacatatccagcgaggcggaattgtttctaaaaaggctgaacatgagctcttccaacaagaaacgagtaaaagtatatgcgaggtttcgtccaacgtctaaattttcgcatgacaacatatcatttgacaaagatgggaaagttattaacatacatgcacgtaaaaacgtaagctcggaagtggtaaacaaccaactgcttaactggtcatttagagtggacggcatactccacaacgcaagtcaagaccaggtctatgatacggtagcatctgacatgaccttaaatacactggaaggtttcaacagcacccttctagcttatggacagactggtgctggcaagactttcacaattacaggtgccactgaaaactacaagcacagggggcttatacccagagcaattgcccaagtttttcgctctgtagaagaaaggagtgatcatgctgttcaaatacagatttcctatttcgaaatctacaacgaaactatgtttgacttgctttctactcttcctgaatctgaaacagcttcaacctacgacagtaagttgacaatcgtggaaggggaagatgggtcagtctgcattaaaggtctttccatgcaccaagctaacaatgaaggagaagcgttgaattacctatttgagggggaaacaaatcgagcaatagcatctcacgctttgaacaaaaactcgtcccgttctcactgtatcttcacaattcatgtcaggtctaaatctcgcactgagtcaaacgctaaatatattcattcaaagcttaacttggtagaccttgctgggtcggagagaattggaaaaactggctctgatggtttaattaaaagagaagcaatgtacatcaacaaatcactcacattcctagagcagacagtaattgctctcgctgataaaaatcgtgaacatatcccgttccgacagactaaattgacccatgctctcaaggactcaattggtggcaaatgcttcacgactatgattgctaatgtgtatggggaagcttcacagctggaagagacagtttcaacacttagatttgctcttagaatgatgaggattccagttcagcctgctattactgagcactatgatccatggttgctggttcaagagatggaaaaggaaatcatgcatttaaagcaggaacttgagatgaacaacacgctggcgaatcgttctcaaatcagttacgatatgctgtctgagagtcagattgctgatataaataagcaggtgcgtatgtatctgcagaggaaaacaactgaaatcgatgttcgtaacctcaggcagatgaacatggtttttgagcagtttcggaatgtgataactgagatggaacaggatataaaggaccgctttaggagcaagtttgttctgttggataaaagtgattcagaggctcttattgctcttcagaaggctgggattcctctggatgaggatggaaactatcttggatcaactgatgcccttccagtgttgaccggaagaagtggagaaacaggaactactcagcaagccgccgcacatggaggagggaagcaaaagcatccaacatcccctaaaagaagaagcgggaagaaatcaagagcaggaggaagtcccacccacagagctccgataagtccatctctgcctgcaccgggagatcacgggcctaaaggaattaaaagtggtgctgctcacagtcaggttgttactgctcaaactgatggagctgagtcaacaaaaaaagacgagtgttcagtttctggggagttgttggtggatgacaggagccatagtcgtccaagtactcctcctccaaggcctgttgcatttgagaatttcaaaaaggaacaggggtgtgagatctataggattctcaatgaaaacaagagccatctgcagagtaagaagcagattgtgcataacttggcgcatgcagtcaatgcaactaaacatatgattgatggaactcgtatggctttggagcgaaaacagaacgagagatatgagcaaggggagtttgtaaatgaagagggtgagactgtgattgacgaggaagagtttcaactcataactcaactgaagaatctcaagcaaacttatcggcatgattatgaagagttaagaaacgtgaaatcggaaatcgattactgccagaaactcgtgaagcaatgcactcaacgccttgttttagagtttgataactggtacagtgaatcttacatgcaaaaaaatggagaagcaaacccattgagctggagcgtaccgaaaccaggagtacagcatcctatgcgtcttcaacttgccaacatccctctgagctctgaagatgagcaggacaagttccagaggcttcaggagacaatgttgggagaccaagaagagattgctttccaaaacgccagaatgagagtccatcgccgaaaagtaaacgaacaagcaatgaaccaagcccaacctgcaaggaggctggctggtggatttattgagacaaacgtccgaaacaagccgcccaaccagatgtcctatgttatgtagtttaaaactgtttgattttcgattattttttcagcttgcaacatatattatttcgcatattttaaattttcggtacaccgttttgttttttaatcaaaaatgattagttttcctaactcagaacacactttatttgacaaagttttgtactaaataacagtatttagataaaaactgtacgtttctgtattaatatttattgcaaaaaaaagaaggttaaattttatactgtactaatacaattttgtaatttaagttatgaacaacatacaaaactcagtattttattgtgcattgtgctccttccattttag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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