2024-09-28 08:06:16, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_002130226 1989 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis sphingosine-1-phosphate phosphatase 2 (LOC100182290), mRNA. ACCESSION XM_002130226 VERSION XM_002130226.4 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004190420.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_002130226.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1989 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="Unknown" gene 1..1989 /gene="LOC100182290" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 64 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 205 samples with support for all annotated introns" /db_xref="GeneID:100182290" CDS 267..1517 /gene="LOC100182290" /codon_start=1 /product="sphingosine-1-phosphate phosphatase 2" /protein_id="XP_002130262.1" /db_xref="GeneID:100182290" /translation="
MDLLWRFTDYFMDFNKVRHFQELCGLQEAKLNLDSTSNGTINEEQDGTESLYSSASKNHPKSDLKQRLHKPASCCDVDQLNDDCSQPQTEPSATIPYVVTNWLLYHMFRFGSTLGHEIFYITCIPCIFWNMDPFIGRKMITVWVVTMYIGQALKDIIKWPRPTWPPVFKLETRVAAEYGIPSTHAIAGTALPFSMLMAMNGRYVFNWELGVLLACMWCALVGFSRIYVGMHSYLDVMAGITLTAAYLILGWPFMELVDEYTLTSKFAPWIIITSHFLLGVIYPNTDRYSTTRGDTIIILGVGAGCHCSSWLHHQYGFLFEPRGSLPYDINLPTFQEIYIGFARAMIGCVITILSRFMFKYLSLFVVCHAVGVSKNDPNARQRKDVEVAYKFITYACVAFVGIGMVPIILEAIGVTF"
misc_feature 570..1013 /gene="LOC100182290" /note="PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second...; Region: PAP2_SPPase1; cd03388" /db_xref="CDD:239482" misc_feature order(726..728,747..749,810..818,939..941,957..959, 969..971) /gene="LOC100182290" /note="active site" /db_xref="CDD:239482" ORIGIN
aacctaacaattggtgtgaatattaaacttttgtactccgtgctggcaatgcatttctcttttgtcactcggagcgcttgccggtttgcgctttgtttcttctattctctcgttgagcatacagatcatgcgctctgtcacggggctggcaagaagagattgtaaagcaaacgttcgttggttgctatagtataaataacagcgtgggcgcgcccctttcaacgatagtttgtcggcgctgtgagtggttactaagtttcaatataatggatctgctttggaggtttactgattattttatggactttaacaaggtccgacattttcaagaactatgtggactacaagaggcaaaacttaatttagacagtacatcaaatggcacaataaacgaggaacaagatggaacagaatcgttgtactccagcgccagcaaaaaccacccaaagtcagatttaaagcaaagattgcataaaccagcatcctgctgtgacgtagatcagttgaatgacgactgtagtcaaccacaaacagagccgagtgcaaccataccatacgttgtaaccaactggctgttgtaccatatgttccggttcggttcaacgctgggacacgaaatattttatatcacatgtattccatgcatattctggaacatggatccttttattggaagaaaaatgatcactgtttgggtggtaaccatgtacataggacaggcattgaaggatattataaaatggccgcgaccaacttggccacctgtgttcaaacttgaaacaagggtagcagcagaatatggaataccatcaacccatgcgattgctggaactgctttaccattctcaatgctaatggcaatgaatgggagatatgtgttcaattgggagctaggagttcttcttgcatgtatgtggtgtgcattggtgggcttcagcagaatttatgttggaatgcattcctatttggatgttatggctgggattacccttactgctgcttatcttatccttggttggccattcatggaattggttgatgaatatacactcacaagtaaatttgccccatggatcatcataacatcgcacttcctacttggtgtaatctacccaaacactgatcgctacagtacaaccagaggtgacacgattatcatacttggtgtaggggcaggttgtcattgttcttcatggttgcaccatcaatatggctttctttttgagccgagaggtagtttgccctacgatatcaacctacctacattccaagaaatatacatcggctttgctcgtgcaatgatcggctgcgtcatcacgatcctatcacgatttatgttcaagtacctatctctgttcgtggtttgtcacgccgttggtgtatcgaaaaacgatcccaacgcccgtcaacgaaaagacgttgaggttgcatacaagttcatcacatatgcttgcgttgcattcgtcgggatcggaatggttccaatcattcttgaagcaatcggcgtaaccttttagttttcaccaatagttgttcacgtctccagtgttaaacctatgcataatgcatggacagaaaatcaaaccatcgtacccttaagtttatttgcaagccagctgttttcgcactataatgcaaaggttgaataggtgttgtatttttaaatcagccgctctaatcacttttttaccaatagcgacccgtccgtttgttgagtttcattttcgctctttctccaagctagaaaaccttttaattgtacattctgtgacccaatgccttaaagatttattttgtataccgtatatatatataccttcttactaacattgtgttctaacgccatgatatgcactaagtcctttatctcaaaacactggtaccgaacgaagcagaaccatgcatgcttatctgcgtgttttaaacgtccactgaatgtcgcaccacgacagcttagtttgcttggaataaatgccaaccaaccgggaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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