LOCUS       NM_001078475            2618 bp    mRNA    linear   INV 04-MAY-2019
DEFINITION  Ciona intestinalis transcription factor protein (meis), mRNA.
ACCESSION   NM_001078475
VERSION     NM_001078475.1
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
REFERENCE   1  (bases 1 to 2618)
  AUTHORS   Satou Y, Kawashima T, Shoguchi E, Nakayama A and Satoh N.
  TITLE     An integrated database of the ascidian, Ciona intestinalis: towards
            functional genomics
  JOURNAL   Zool. Sci. 22 (8), 837-843 (2005)
   PUBMED   16141696
REFERENCE   2  (bases 1 to 2618)
  AUTHORS   Imai KS, Hino K, Yagi K, Satoh N and Satou Y.
  TITLE     Gene expression profiles of transcription factors and signaling
            molecules in the ascidian embryo: towards a comprehensive
            understanding of gene networks
  JOURNAL   Development 131 (16), 4047-4058 (2004)
   PUBMED   15269171
REFERENCE   3  (bases 1 to 2618)
  AUTHORS   Satou Y and Satoh N.
  TITLE     Genomewide surveys of developmentally relevant genes in Ciona
            intestinalis
  JOURNAL   Dev. Genes Evol. 213 (5-6), 211-212 (2003)
   PUBMED   12736827
REFERENCE   4  (bases 1 to 2618)
  AUTHORS   Satou Y, Yamada L, Mochizuki Y, Takatori N, Kawashima T, Sasaki A,
            Hamaguchi M, Awazu S, Yagi K, Sasakura Y, Nakayama A, Ishikawa H,
            Inaba K and Satoh N.
  TITLE     A cDNA resource from the basal chordate Ciona intestinalis
  JOURNAL   Genesis 33 (4), 153-154 (2002)
   PUBMED   12203911
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB210548.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB210548.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00013799, SAMD00028081
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2618
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="10"
                     /map="10"
     gene            1..2618
                     /gene="meis"
                     /note="transcription factor protein"
                     /db_xref="GeneID:778904"
     exon            1..155
                     /gene="meis"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    120..122
                     /gene="meis"
                     /note="upstream in-frame stop codon"
     CDS             144..1808
                     /gene="meis"
                     /codon_start=1
                     /product="transcription factor protein"
                     /protein_id="NP_001071943.1"
                     /db_xref="GeneID:778904"
                     /translation="

MSQQQFDDGMAHFGGMNDLRDMSQPSSGAGGLYGGDLNRSIPQLGHLSHGHSSMSHFSASTPGSAHPMSTMHATQSSGSSTSMDERLSDSERVNLKGDKDAIYSHPLFPLLALVFEKCELATCTPRDPGVTGGDVCSSDSFNDDIACFAKQIHSENRPITFDPNNEIDNLMILSIQVLRFHLLELEKVHELCQNFTSRYINCLKGKMPIDLVIEDREGGVPSKLEANEPTSSGSEQSFYNQETPSHPSMDTNAMHAGNMGGGGPVAIPAQSSSHHHLHTPSTHQHQQQHHHNADSSPTGSTIEGSTYSGEGGNEDDSDPGKKPQQKKRGIFPKQATNIMRAWLFQNLTHPYPTEEQKKSLANQTGLTILQVNNWFINARRRIVQPMIDQSNRAVSNAMGPYSPDGQSMGGFLCMDGQPPHMAMRHPGWPSGFQSMPGAADMMAAQHISMAAANSSFNPTSTMSPSHHPSGLHHQLRHPPSQAMLLPGSHQHHHAAAAAAAMMMPHHAAAVAAAAGHSAVTGMGHHPHHGHHLHHSGQSTMNPADMSSHMLGHTC"

     misc_feature    537..797
                     /gene="meis"
                     /note="N-terminal of Homeobox Meis and PKNOX1; Region:
                     Meis_PKNOX_N; pfam16493"
                     /db_xref="CDD:465140"
     misc_feature    order(1119..1130,1134..1136,1194..1196,1212..1214,
                     1251..1253,1257..1262,1269..1274,1278..1286)
                     /gene="meis"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(1122..1124,1131..1133,1260..1262,1269..1274,
                     1281..1283)
                     /gene="meis"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1170..1286
                     /gene="meis"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     exon            156..454
                     /gene="meis"
                     /inference="alignment:Splign:2.1.0"
     exon            455..596
                     /gene="meis"
                     /inference="alignment:Splign:2.1.0"
     exon            597..653
                     /gene="meis"
                     /inference="alignment:Splign:2.1.0"
     exon            654..704
                     /gene="meis"
                     /inference="alignment:Splign:2.1.0"
     exon            705..851
                     /gene="meis"
                     /inference="alignment:Splign:2.1.0"
     exon            852..1038
                     /gene="meis"
                     /inference="alignment:Splign:2.1.0"
     exon            1039..1187
                     /gene="meis"
                     /inference="alignment:Splign:2.1.0"
     exon            1188..1264
                     /gene="meis"
                     /inference="alignment:Splign:2.1.0"
     exon            1265..1323
                     /gene="meis"
                     /inference="alignment:Splign:2.1.0"
     exon            1324..1434
                     /gene="meis"
                     /inference="alignment:Splign:2.1.0"
     exon            1435..2599
                     /gene="meis"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtataggttttaggatatttaggcaataaagtttatgtactatacccactgtatatttggacgatttgtgtcgaaatactttttgggaaatactgtctctactgaaaacttatttggagtaaattcaaagaaagaaaagaaaaatgtcgcaacagcagtttgacgacggaatggcgcacttcggcggcatgaacgacctaagagatatgagccaaccgtcatcgggcgcgggcggactgtacggcggggatttgaaccgctcgatcccgcagctcgggcatctttcgcacgggcactcgtcgatgtcacatttctcagcgagtacacctggatctgcacatccaatgtcaactatgcatgcgacgcagtcgtcaggttcatctacgagtatggacgaaagattaagcgactcggaacgcgtcaatctgaagggagacaaggacgccatttattcacaccccctgttcccgctgctggctctggtcttcgaaaaatgtgagttagcgacctgtacaccacgtgaccccggcgtaacaggcggtgacgtatgctcttccgattcattcaacgacgacattgcgtgttttgctaagcagattcattccgaaaaccgaccaatcaccttcgaccccaacaacgaaatcgacaacctgatgatcctgtctattcaggttctgcgtttccacctgcttgagttagaaaaggttcacgagctatgtcagaacttcacatcaaggtatattaactgcctaaaaggaaaaatgcccattgacctggtcatagaggatcgggaagggggagtcccctcgaaactggaagcgaatgagccgacctcatcaggctccgaacaatcattctataaccaagaaacaccttcccatcctagtatggatacaaacgctatgcacgcgggcaacatgggcggtggggggcctgtggcaataccagcacagtcgtcatcccaccaccacctacatacaccgtcaacacatcagcaccaacagcaacatcaccataacgcggactccagtccaacaggaagcaccatagaagggagtacatactccggggaaggaggtaacgaagatgattccgatcccggcaagaaaccccagcaaaagaaaagaggaatcttcccaaaacaagcgactaatattatgagagcttggcttttccaaaacttaacgcacccttacccaaccgaagaacaaaagaaatctttagctaaccaaaccgggcttacgatactgcaagtgaacaactggttcattaacgcgagacggagaatagtccaaccgatgatcgaccaatccaatagagcagtgagcaatgctatgggaccatacagccctgatggtcaatctatgggcggcttcttatgcatggacggacagccaccgcacatggcaatgcgtcacccaggatggccgtcaggtttccaaagcatgcctggcgcagctgatatgatggcagcacagcatatatcaatggcagctgcaaacagctcattcaacccgacctccactatgtcaccttcacaccacccttcaggacttcaccaccaacttcgacaccccccctcacaagccatgctgcttcccgggtctcaccagcaccaccacgcggcagccgcagcagcagcaatgatgatgccacaccatgcagcggcggtggctgcggccgctggacacagcgcagtaacaggcatgggccaccacccgcaccacggccaccacctacaccattcaggccaatctacgatgaatccagcggacatgtcgtctcatatgctcggccatacttgctagcaaagtctccttaaatccgagcggtagctcgtgagcaaacgttggagttaacgcgcggatgaactccatccagacagcgcgtaccacgggcggattgcacctaagggatggctacccgcctcgtgacaaccaatggttccagtcagtttgctacctcttattagcgttcgaccacgagagcgctgctcacaaagagtgttcgtcttttcggtcaaaccacgtgacccggcgtcaccggcgcaacgtgccaatgtaactgaaacgtccaagacgtcgcgtcgtatttattgttgctacgaaggcaaatgttcgttctcggtgttgtcgtttatcattgtgacgtaatgaaccacccctttgtgacggtacgagatgtatgaacgacaactttactatgcactaaacgcccagcaaaaaaagtacaaacttttttcataaacggacccaaaatcaagttttagcaaatcgttttctacatatacacagactacataatatcgtatacagaaacacaatagtaaataaacagaaccagtgttcatcactaccgcatattatatgacagttcattttgccgaaaaagattacatcagtacaccgctgacgtcacgtctgttacgtcatcgcctgttcgtttcccccacttcatttatacccgagctcggaatattttagtacgtcttcgtgatgtaacgttttttttcttcttattattattagtactattgttcgtatataatgagacacggaagatgattgttcgtgagaaaaaattacagcaccaaatactgtaaaaaaaaaaaaaaaaaa

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