2024-09-28 11:16:17, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_182192 4142 bp mRNA linear INV 11-JUN-2024 DEFINITION Caenorhabditis elegans Protein argonaute-2 (alg-2), partial mRNA. ACCESSION NM_182192 VERSION NM_182192.6 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 4142) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 4142) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4142) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (23-MAY-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 4142) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003280). On Feb 2, 2021 this sequence version replaced NM_182192.5. COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..4142 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="II" gene <1..4142 /gene="alg-2" /locus_tag="CELE_T07D3.7" /db_xref="GeneID:173468" CDS 1..2733 /gene="alg-2" /locus_tag="CELE_T07D3.7" /standard_name="T07D3.7a" /note="Confirmed by transcript evidence" /codon_start=1 /product="Protein argonaute-2" /protein_id="NP_871992.1" /db_xref="GeneID:173468" /translation="
MFPLPVHNGPRLGKLSIFEMPGDSLTSSSFMPDGGAETSSSSQLGGSAHGAIGTKPDAGVQFQCPVRPNHGVEGRSILLRANHFAVRIPGGSVQHYQIDVFPDKCPRRVNREVIGCLISSFSKYFTNIRPVYDGKRNMYTREPLPIGTEPMNFEVTLPGDSAVERKFSVTMKWIGQVCLSALDDAMEGRVRQVPHEAVQSIDVILRHLPSLKYTPVGRSFFTPPGVMKPGMQMHQESKLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYRAMPVIEFVAEVLELPVQALAERRALSDAQRVKFTKEIRGLKIEITHCGAVRRKYRVCNVTRRPAQTQTFPLQLETGQTIECTVAKYFFDKYRIQLKYPHLPCLQVGQEQKHTYLPPEVCDIVPGQRCLKKLTDVQTSTMIKATARSAPEREREICKLVSKAELSADPFAHEFGITINPAMTEVKGRVLSAPKLLYGGRHRATTALPNQGVWDMRGKQFHTGMEVRTWAIACFAQQSHVKENDLRMFTTQLQRISTDAGMPIIGTPMFCKYASGVEQVEPMFKYLKQTYSAIQLIVVVLPGKTPIYAEVKRVGDTVLGIATQCVQAKNAIRTTPQTLSNLCLKMNVKLGGVNSILLPNVRPRIFNEPVIFLGCDITHPAAGDTRKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIITDLTYMVRELLVQFYRNTRFKPARIVVYRDGVSEGQLFNVLQYELRAIREACVMLESGYQPGITFIAVQKRHHTRLFAADKADQVGKAFNIPPGTTVDVGITHPTEFDFFLCSHAGIQGTSRPSHYHVLWDDNDLTADELQQLTYQMCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDRDHGSGEEGSQPSGTSSEDTTLSSMAKAVQVHPDSNNVMYFA"
misc_feature 223..615 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 643..819 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 820..1185 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(979..981,1024..1026,1066..1068,1078..1080, 1132..1134,1153..1155,1159..1161) /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1318..2598 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1732..1734,1744..1746,1780..1791,1798..1800, 1822..1824,1831..1833,1843..1845,1855..1857) /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1936..1938,1942..1944,2152..2154,2566..2568) /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="active site" /db_xref="CDD:240015" ORIGIN
atgttccctctgcctgtacacaatggtcctagacttggaaaattatcgattttcgaaatgcccggcgattcgctgacatcgtcgtctttcatgccagatggtggcgcagaaacgtcgagctcttcacagttgggcggctcggctcacggagcaattggcacaaaacccgacgcaggcgtccaattccagtgcccagtccgtccgaaccatggagtcgagggccgatccatcctcctgcgagccaatcattttgcagtacggatccccggaggttcagtccaacattatcaaattgacgtctttccggacaagtgcccaagacgggttaatcgcgaggtaatcggctgcctgatctcctccttctcaaaatatttcaccaatattcgaccagtctacgatggaaagcgtaacatgtacacgcgggagcccctaccaattggcacggagcccatgaactttgaggtgacgctgcctggagattcagcagtggaacggaagttctcagtgacgatgaagtggatcggtcaggtctgtctgtcagctctggacgatgccatggaaggtagagtgcggcaggttccacatgaagccgttcagtcgatcgatgtgattcttcgccacttgccaagtttgaagtacaccccggttggaaggtcgtttttcacacctccaggcgtcatgaagcccggcatgcaaatgcaccaggagagcaaactcggtggaggccgcgaagtatggtttggattccatcaatccgtccgaccatcccaatggaagatgatgctcaacattgacgtctccgccacggccttttaccgcgcgatgccagtcatcgaattcgtcgccgaggtgctcgagctcccagtccaagctctcgccgagcgtcgggccctctccgatgctcaacgcgtcaaattcaccaaagagatccgtggactcaagattgagatcacccattgtggagccgtgcgccggaagtacagagtttgcaacgtcacacgccgcccggcccagacccagaccttcccattgcaactggagactggccaaactattgagtgtactgtagccaagtacttctttgacaagtaccgtatccagctgaagtacccccaccttccatgcctccaagtcggtcaggagcagaagcatacgtacctgccaccagaggtctgcgatattgttccaggacagcgttgtctgaagaagctcaccgatgtgcagacgtccaccatgatcaaggccacggctcgttccgctccagagcgtgagcgtgagatttgtaagctagtaagcaaggctgagctctccgcggatccatttgctcatgaattcggaatcactatcaatccagcaatgactgaagtcaagggacgtgtgctctcggctccgaagcttctctatggaggtcgtcatcgtgccacaactgcccttccgaaccagggagtctgggatatgcgcgggaagcagttccacactggaatggaagtccgtacctgggcgattgcatgctttgctcagcaatctcatgtcaaggaaaatgatctcaggatgttcacgactcaattgcaaaggatctctaccgacgctggaatgccaatcatcggtacccctatgttctgcaaatatgcttctggagtggagcaggtggagccgatgttcaagtacttgaagcagacctattcggcgattcagttgattgtggtggtgctgccaggaaagactccgatctatgccgaagtgaaacgcgtcggagacaccgtcctcggaatcgccacccagtgcgtccaggccaagaacgccatccgaaccaccccgcagacactctccaacctctgtctcaagatgaatgtgaagcttggtggagtcaacagcatcctcctgccaaacgtgcgtccacggatcttcaacgagcccgtcatcttcctgggttgcgacatcacccatccagcagccggtgatacccgtaagccatccatcgccgcagtggtaggatctatggatgctcacccgagtagatatgcggcaacagttcgggtccagcagcaccgtcaggagatcattacggatctgacatatatggttcgagagttgcttgtccagttctaccgtaacacgaggttcaagccagcccgaattgtggtctacagagatggagtgtctgagggtcaactcttcaatgtgctccaatatgagctccgcgcaattcgtgaagcttgtgtgatgcttgagagtggataccagccaggaatcacatttatcgctgtgcaaaagagacatcacacaaggctcttcgccgcggataaagctgatcaagtaggaaaagcattcaacatcccaccaggaacaactgtagatgtgggaatcacgcatccaacggaattcgacttcttcctctgctcccacgctggtatccaaggaacatcccgaccatctcactaccatgtgctctgggatgacaatgatctgacggccgacgagcttcaacagttgacctaccaaatgtgtcatacctatgtaagatgcacgaggtctgtgtcgatcccggcgccggcgtactatgcacatctggtggcgttccgtgctcgttatcacttggtcgatagggatcatggatccggagaggaaggatcacaaccttcggggacgtcgtcggaggatacaacattgtcaagcatggccaaggccgtacaggttcatcccgactcgaacaacgtcatgtattttgcctaagtctccaactacggattctctgccatttcacagccacttgttatctatgcatctcgattttcatttttcccgtttcctctgccccctgagattttcatgtttttccttcccctaattatcaatatcaatcaatactttaatatctttcaagcccaggtttataatatttccaattatgttaggtgtttaattttcaccaagttttttttccatttttttccaaatttcttgagccattttccatactagccacacaatgctttttcgatcctccaaatactttccatttgtgtctttatccccctctgctctaattaaatacgaccttatcactcaattggtacactttgttgtaaactgtctttctcttagtatctgaaaaaaaacctcatgattgtcctgtttttcaacccacccccacccacaatgcctttttgtgtttcccaatggcaagtccaacagaataaagtgatattttggaacccacaggatgtccgctgctattagggggcccgtaagatgggcgctgtttctgtacgccagtgagatgtccgctgcttctagaacaccattagatgtcggctgctctattgggctcggggcatgtccgctgctttagcaaacgctgctctattaagcccgtatgatgtccgctgctattagggaacctgtgggatgtccactgcttctaaaagcctgattgtctcctactttgcaccagtgatcccgtaagatgcccgctgcttctgagaacccataagatgtctgctgctgttcaatatgcccgtaaaacaggatctcaacgtctttattttgttataccacgttactattttccaagttagatgtactgctttcttctctcgacctctgctgtctcacattcctgcctctcctcccatgaaatcctcttccgcgttggtcgtatagaggatcatatccacctccgtaatagattccgttaccaatacgacaacagaatcgaactcccatgtatatgaagccaacgcagattgtcacaacaaccactaccgttaaaattgtaccgaagccatccatatcgtcgccatgactcatttgcttgactcgatgcgagatgtcttttcttcttttctattgtcgttccccttcttttctattgtcgttcccctttggaacagtatagttcacaatgtatcaacattcctttccccctcccaggttatgaacctcataaaccaacaaatctcatttttttaaatttctcgttgatttatcctcttctgtcaaatagtatttacttttcatacttaagatggactctgacgggtctttcttattttatgtgttattcgattttccccgttgatcttctatgtattacattttgttactatttatcaaatttcgaataaacaaacaaaacaatt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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