2024-09-28 11:16:25, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_171160 566 bp mRNA linear INV 11-JUN-2024 DEFINITION Caenorhabditis elegans ANK_REP_REGION domain-containing protein (C18F10.7), mRNA. ACCESSION NM_171160 VERSION NM_171160.5 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 566) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 566) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 566) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (23-MAY-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 566) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003281). On Sep 4, 2019 this sequence version replaced NM_171160.4. FEATURES Location/Qualifiers source 1..566 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="III" gene 1..566 /gene="C18F10.7" /locus_tag="CELE_C18F10.7" /db_xref="GeneID:175889" CDS 6..416 /gene="C18F10.7" /locus_tag="CELE_C18F10.7" /standard_name="C18F10.7b" /note="Confirmed by transcript evidence" /codon_start=1 /product="ANK_REP_REGION domain-containing protein" /protein_id="NP_741185.1" /db_xref="GeneID:175889" /translation="
MPLDSPAKLEFPLHWAVYVDCKDELNELLKNKSTLEIDKIDPRGRTPLMLAVTLQHFDCARLLMDAGADASIPNKEMWSVSNEAVAQGNEQFIQEVIHHRDYQRANRGAHAMKRSLEKLAEVPDFFCEMNWDFSNL"
misc_feature <39..305 /gene="C18F10.7" /locus_tag="CELE_C18F10.7" /note="Ankyrin repeat [Signal transduction mechanisms]; Region: ANKYR; COG0666" /db_xref="CDD:440430" misc_feature 39..128 /gene="C18F10.7" /locus_tag="CELE_C18F10.7" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" misc_feature order(45..50,57..65,69..74,84..86,93..95,126..128, 132..134,138..140,150..155,162..170,174..179,189..191, 198..200,225..227,231..233,237..239,249..254,261..269, 273..278) /gene="C18F10.7" /locus_tag="CELE_C18F10.7" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:293786" misc_feature 132..227 /gene="C18F10.7" /locus_tag="CELE_C18F10.7" /note="ANK repeat [structural motif]; Region: ANK repeat" /db_xref="CDD:293786" ORIGIN
gcggaatgccgctggattcgccagcgaaactcgaattccctctacactgggcagtgtacgtcgactgcaaggatgagctgaatgagcttctaaaaaataaatcaacgctggaaatcgataaaattgatccgaggggaagaactccattgatgctcgccgtgactctccaacacttcgattgtgcacggcttctgatggatgcaggagctgatgcgagcattccaaataaagaaatgtggtctgtatcgaatgaagcagttgctcaaggaaatgaacaattcattcaagaagtaatccatcatcgtgattatcagagagcaaatcgtggtgctcatgcgatgaaaagatctctggaaaagctggcagaagtaccggatttcttctgtgagatgaattgggatttttcgaatttataaaagaggctcaagcgttcgaatcgacacaacactcgtttcattcgaaggtgccagctgggtgcgcggtaatcagtcttacatttttcggttgagtagaaacggatacgctgaattcatcgtactggaccacgacgaacgaatcgctgcagt
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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