2024-09-28 11:20:08, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_069676 693 bp mRNA linear INV 11-JUN-2024 DEFINITION Caenorhabditis elegans Small ribosomal subunit protein uS7 (rps-5), mRNA. ACCESSION NM_069676 VERSION NM_069676.6 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 693) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 693) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 693) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (23-MAY-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 693) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003282). On Feb 2, 2021 this sequence version replaced NM_069676.5. FEATURES Location/Qualifiers source 1..693 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="IV" gene 1..693 /gene="rps-5" /locus_tag="CELE_T05E11.1" /db_xref="GeneID:178012" CDS 2..634 /gene="rps-5" /locus_tag="CELE_T05E11.1" /standard_name="T05E11.1" /note="Confirmed by transcript evidence" /codon_start=1 /product="Small ribosomal subunit protein uS7" /protein_id="NP_502077.1" /db_xref="GeneID:178012" /translation="
MADNWGSENVVADAAPATEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR"
misc_feature 74..631 /gene="rps-5" /locus_tag="CELE_T05E11.1" /note="Eukaryota homolog of Ribosomal Protein S7; Region: uS7_Eukaryote; cd14867" /db_xref="CDD:271246" misc_feature order(158..166,170..181,278..280,290..292) /gene="rps-5" /locus_tag="CELE_T05E11.1" /note="S9 interface [polypeptide binding]; other site" /db_xref="CDD:271246" misc_feature order(170..172,176..178,188..199,206..208,230..232, 239..241,245..259,269..283,290..292,410..418,422..424, 452..454,473..475,494..496,503..505,521..526) /gene="rps-5" /locus_tag="CELE_T05E11.1" /note="rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:271246" misc_feature order(302..304,311..316,323..325,521..523,527..532) /gene="rps-5" /locus_tag="CELE_T05E11.1" /note="S25 interface [polypeptide binding]; other site" /db_xref="CDD:271246" misc_feature order(407..409,416..418,422..424,629..631) /gene="rps-5" /locus_tag="CELE_T05E11.1" /note="S11 interface [polypeptide binding]; other site" /db_xref="CDD:271246" ORIGIN
gatggccgataactggggatctgaaaacgtcgtcgccgacgccgctccggctaccgaagctccagaggttgctctcttcggaaaatggtcgctccagagcgtgaatgtatccgacatctcccttgtcgactacattccagttaaggagaagtccgccaagtaccttccacattcggctggacgcttccaagtccgccgtttccgcaaggccgcttgcccaatcgtcgaacgtctcgccaactccttgatgatgcacggacgcaacaacggaaagaagcttatgaccgtcagaatcgtcaagcacgcctttgagatcatctacttgctcaccggagagaacccagtccaagttttggtcaacgccgttatcaactcgggaccacgtgaagactccacccgtattggacgtgccggaactgtccgcagacaagctgttgacgttgccccactcagaagagtcaaccaggctatctggcttctctgcactggagctcgtgaggctgccttcagaaacgttaagaccatcgccgaatgcttggctgatgagctcatcaacgccgccaagggatcctccaacagctacgctatcaagaagaaggatgagctcgagcgtgtcgccaagtccaaccgataagcaacttgttgtttttctttatccggttgtccggcaactgataaagtattgtttgttca
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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