2024-09-28 11:20:22, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_066360 5883 bp mRNA linear INV 11-JUN-2024 DEFINITION Caenorhabditis elegans Death-promoting deoxyribonuclease (dcr-1), mRNA. ACCESSION NM_066360 VERSION NM_066360.4 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 5883) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 5883) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5883) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (23-MAY-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 5883) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003281). On Sep 4, 2019 this sequence version replaced NM_066360.3. FEATURES Location/Qualifiers source 1..5883 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="III" gene 1..5883 /gene="dcr-1" /locus_tag="CELE_K12H4.8" /db_xref="GeneID:176138" CDS 8..5740 /gene="dcr-1" /locus_tag="CELE_K12H4.8" /standard_name="K12H4.8" /note="Confirmed by transcript evidence" /codon_start=1 /product="Death-promoting deoxyribonuclease" /protein_id="NP_498761.2" /db_xref="GeneID:176138" /translation="
MVRVRADLQCFNPRDYQVELLDKATKKNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQGGKRAFFVVEKVNLVEQQAIHIEVHTSFKVGQVHGQTSSGLWDSKEQCDQFMKRHHVVVITAQCLLDLIRHAYLKIEDMCVLIFDECHHALGSQHPYRSIMVDYKLLKKDKPVPRVLGLTASLIKAKVAPEKLMEQLKKLESAMDSVIETASDLVSLSKYGAKPYEVVIICKDFEIGCLGIPNFDTVIEIFDETVAFVNTTTEFHPDLDLDPRRPIKDSLKTTRAVFRQLGPWAAWRTAQVWEKELGKIIKSQVLPDKTLRFLNMAKTSMITIKRLLEPEMKKIKSIEALRPYVPQRVIRLFEILETFNPEFQKERMKLEKAEHLSAIIFVDQRYIAYSLLLMMRHIKSWEPKFKFVNPDYVVGASGRNLASSDSQGLHKRQTEVLRRFHRNEINCLIATSVLEEGVDVKQCNLVIKFDRPLDMRSYVQSKGRARRAGSRYVITVEEKDTAACDSDLKDFQQIEKILLSRHRTVNNPIEDDSDRFEEFDVDSQMEPYVVEKTGATLKMSTAIALINRYCSKLPSDIFTRLVPHNQIIPIEENGVTKYCAELLLPINSPIKHAIVLKNPMPNKKTAQMAVALEACRQLHLEGELDDNLLPKGRESIAKLLEHIDEEPDEYAPGIAAKVGSSKRKQLYDKKIARALNESFVEADKECFIYAFELERFREAELTLNPKRRKFEDPFNYEYCFGFLSAKEIPKIPPFPVFLRQGNMKVRLIVAPKKTTVTAAQLQEIQLFHNYLFTQVLQMCKTGNLEFDGTSNAPLNTLIVPLNKRKDDMSYTINMKYVSEVVANMENMPRIPKDEVRRQYKFNAEDYKDAIVMPWYRNLEQPVFYYVAEILPEWRPSSKFPDTHFETFNEYFIKKYKLEIYDQNQSLLDVDFTSTRLNLLQPRIQNQPRRSRTVSNSSTSNIPQASASDSKESNTSVPHSSQRQILVPELMDIHPISATLWNVIAALPSIFYRVNQLLLTDELRETILVKAFGKEKTKLDDNVEWNSLAYATEYEEKQTIIVKKIQQLRDLNQKSIEDQERETRENDKIDDGEELFNIGVWDPEEAVRIGVEISSRDDRMDGEDQDTVGLTQGLHDGNISDEDDELPFVMHDYTARLTSNRNGIGAWSGSESIVPSGWGDWDGPEPDNSPMPFQILGGPGGLNVQALMADVGRVFDPSTASSSLSQTVQESTVSPPKQLTKEEEQFKKLQNDLLKQAKERLEALEMSEDMEKPRRLEDTVNLEDYGDDQENQEDENTPTNFPKTIDEEIEELSIGARKKQEIDDNAAKTDVLERENCEVLPVAINEKSRSFSFEKESKAINGRLIRQRSEEYVSHIDSDIGLGVSPCLLLTALTTSNAADGMSLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSNCNLYRLGKKLGIPQLIVANKFDAHDSWLPPCYIPTCDFKAPNTDDAEEKDNEIERILDGQVIEEKPENKTGWDIGGDVSKSTTDGIETITFPKQARVGNDDISPLPYNLLTQQHISDKSIADAVEALIGVHLLTLGPNPTLKVMNWMGLKVIQKDQKSDVPSPLLRFIDTPTNPNASLNFLNNLWQQFQFTQLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDSRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSERNFDTNFNAEMYMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMRGTIELCCANPPRSPIRELMEFEQSKVRFSKMERILESGKVRVTVEVVNNMRFTGMGRNYRIAKATAAKRALKYLHQIEQQRRQSPSLTTV"
misc_feature 38..646 /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="DEXH-box helicase domain of endoribonuclease Dicer; Region: DEXHc_dicer; cd18034" /db_xref="CDD:350792" misc_feature order(38..49,56..58,107..130,251..253,443..445,548..550) /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350792" misc_feature order(215..220,287..292,368..370,374..379,386..388, 461..466,470..472) /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:350792" misc_feature 749..1036 /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="Partner-binding domain of the endoribonuclease Dicer; Region: Dicer_PBD; cd15903" /db_xref="CDD:277191" misc_feature order(764..769,776..778,782..787,965..970,977..982, 989..991,998..1003,1010..1012) /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="Trbp binding interface [polypeptide binding]; other site" /db_xref="CDD:277191" misc_feature 1076..1522 /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="C-terminal helicase domain of the endoribonuclease Dicer; Region: SF2_C_dicer; cd18802" /db_xref="CDD:350189" misc_feature order(1181..1189,1391..1393,1448..1450,1454..1456) /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:350189" misc_feature order(1403..1405,1409..1411,1484..1486,1490..1492) /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 1718..1999 /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 2513..2875 /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order(2696..2698,2735..2737,2753..2755,2765..2767, 2819..2821,2843..2845,2849..2851) /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239209" misc_feature 4190..4567 /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="Ribonuclease III family; Region: RIBOc; smart00535" /db_xref="CDD:197778" misc_feature order(4244..4249,4256..4261,4268..4270,4277..4282, 4289..4294,4298..4306,4334..4336,4760..4762,4787..4789) /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238333" misc_feature order(4244..4246,4253..4255,4265..4267,4730..4732, 4739..4741) /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="active site" /db_xref="CDD:238333" misc_feature order(4253..4255,4730..4732,4739..4741) /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:238333" misc_feature 4982..5479 /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional...; Region: RIBOc; cd00593" /db_xref="CDD:238333" misc_feature order(5042..5047,5054..5059,5066..5068,5075..5080, 5087..5092,5096..5104,5132..5134,5408..5410,5441..5443) /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238333" misc_feature order(5042..5044,5051..5053,5063..5065,5378..5380, 5387..5389) /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="active site" /db_xref="CDD:238333" misc_feature order(5051..5053,5378..5380,5387..5389) /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:238333" misc_feature 5501..5692 /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="double-stranded RNA binding motif of endoribonuclease Dicer and similar proteins; Region: DSRM_DICER; cd10843" /db_xref="CDD:380680" misc_feature order(5501..5506,5510..5515,5522..5527,5534..5539, 5549..5551,5564..5566,5570..5575,5579..5581,5585..5587, 5636..5647,5654..5656) /gene="dcr-1" /locus_tag="CELE_K12H4.8" /note="putative RNA binding site [nucleotide binding]; other site" /db_xref="CDD:380680" ORIGIN
accaataatggtcagggtaagagctgatttacaatgttttaaccccagggactaccaggtggaacttttggataaagcgacaaaaaagaacacaatcgtccaactaggcactggttcaggaaaaactttcattgcagttctactgctgaaagaatatggagttcaattgtttgcaccattggatcagggtggaaaacgagcgttttttgttgtagagaaagtaaacctcgttgaacaacaagctatccacatcgaagttcacacaagtttcaaagttggtcaggtccacggacagacaagtagtggtttatgggacagcaaagaacaatgtgatcagttcatgaagaggcaccatgttgttgtgatcacagctcaatgccttcttgatttgattcgacatgcgtacttgaaaattgaagacatgtgtgttctgatctttgacgaatgtcatcatgctctcggttctcaacatccatacagaagcatcatggtcgattataagttattgaaaaaggacaaacccgtcccacgtgtattaggactcacagccagtcttatcaaagcgaaagttgcgccggaaaaactaatggaacagttaaaaaagttggaatctgcgatggacagtgttatagagacagctagtgatttagtctcgctctcgaaatacggtgcgaaaccctatgaagttgtgatcatctgcaaagactttgaaattgggtgcctgggtattccgaatttcgacacagttatagaaatatttgatgaaactgtagcctttgtgaacaccacaacagaatttcatccagatctagatttggatcctcgtagaccgattaaagattctctcaagacgacgcgagctgtttttcgtcaactgggaccttgggcggcatggcgaacggctcaagtttgggagaaagagttgggaaaaattataaaatctcaagtgctaccggataagacgttgcggtttttgaatatggcaaaaacatctatgattacgattaaaagattgttggaaccggagatgaagaaaatcaaaagtattgaagctctccgtccatatgttcctcaacgtgtcatacgtcttttcgaaatcctagaaactttcaaccccgaatttcaaaaagaacgaatgaagttagaaaaagcagaacatttatcagccattatttttgtcgatcaacggtacattgcatattcgttacttcttatgatgcgtcatattaaatcatgggagcctaagttcaagtttgtgaacccggattacgtcgttggagccagcggacgaaatttggcgagttcggatagtcaaggattacataaacgacaaactgaagttcttcgccgtttccatcgaaatgaaatcaattgtcttatcgctacatcagtgcttgaagaaggtgtagatgttaaacaatgtaatcttgtgattaaatttgatcgaccacttgacatgagatcatacgttcagtcaaagggaagagctcggcgagctggatcaagatatgttatcactgttgaggagaaagatactgcggcgtgtgatagtgatttgaaagatttccagcaaatagaaaaaattcttcttagccgccatcgtacagtcaacaatcctattgaagatgattcggatagatttgaagaatttgatgttgattctcaaatggaaccatatgttgttgaaaaaactggtgcaacattgaaaatgtcaactgctatcgcattaattaatagatattgttcgaagcttccttccgatatcttcactcgtcttgttccacacaatcaaatcattccaattgaagagaatggagtgaccaaatactgtgcagagcttcttcttccaattaactcaccgatcaaacatgcaattgtgctcaaaaatccaatgccaaataagaagactgcacagatggcagttgcacttgaagcatgtcgacaattacatttagaaggagaactcgatgataatttacttccaaaaggaagagagtcgattgccaaattattagaacatattgatgaggagccggatgagtatgcacctggaattgctgctaaagttggatcatcaaaacgaaagcaattatatgacaaaaagattgctcgtgctctcaatgaatccttcgtggaagcagataaggaatgtttcatctatgcattcgaattggaacgtttccgggaagccgaacttacgttgaacccgaaaagacgaaagtttgaagatccatttaattatgaatattgcttcggatttctgagcgcaaaagagataccaaagatcccaccattcccagtgtttcttcgacaaggaaatatgaaagtccgattgattgtcgcaccgaaaaagactaccgtaaccgctgctcagcttcaagagattcaactgttccataattatttgttcacacaagttcttcaaatgtgtaaaacgggaaatttggaattcgatggaacatcaaatgcaccattgaacacgttgattgttccacttaacaagcgaaaagatgatatgtcctacacaatcaacatgaaatatgtatcggaagtagttgcaaacatggaaaatatgccacgtattccaaaagatgaagttcgtcgtcaatacaaattcaacgctgaagattataaggatgcgatcgtaatgccgtggtatcgaaatctggaacagcctgtattctactatgttgctgaaattctaccagaatggaggccgtcgtcgaaattcccggatacgcacttcgaaacgtttaacgagtatttcatcaagaaatataaattagagatttatgatcagaatcaaagtttattggatgtagatttcacatctactcgtcttaaccttcttcaacctcgaattcaaaatcaaccacgtcgttcaagaactgtgagtaactcctcaacgtcaaatattcctcaagcatctgcttctgattcaaaagagtcgaatacttccgttccacactcttcacaacgtcagatccttgtaccggaattgatggacattcatcctatctctgcgactctttggaatgttatagcagccctgccaagtattttctatcgtgttaatcagttattgttgactgatgaacttcgagaaacaattttggtgaaagcttttggaaaagagaaaactaaactggatgataatgttgaatggaattctctggcatatgcaaccgaatatgaagagaaacaaacgataatcgttaagaaaattcaacaattgagagatttaaatcaaaaatcgattgaagatcaagaaagagagacgagagaaaatgataagattgacgatggtgaggagttattcaatattggagtttgggatccagaagaggcagtcagaattggtgtagaaattagttcaagagatgatagaatggacggtgaagatcaggatactgtaggactaacacaaggacttcatgatgggaatatatccgatgaagacgatgaactgccgtttgtaatgcatgattacacagccaggctcacttctaacagaaatggaattggtgcatggtcaggatctgagtctattgttccaagcggatggggagattgggatggacctgaaccagataatagtcccatgcctttccaaattctcggtggaccaggtggtttgaatgtgcaggcactgatggctgatgtcggaagagtttttgatccatctactgcttcgtcttccctttctcaaactgtacaagaatcgacagtttcacctccaaaacaattgacaaaagaagaagaacagtttaagaaacttcaaaatgacttgctgaaacaagcaaaagagcgacttgaagctctagaaatgtcagaagatatggagaaaccgcgaagattggaggatactgtgaatttagaagattatggagatgatcaagaaaatcaagaggatgagaatacaccaacaaatttcccgaaaaccatagatgaagaaattgaagagttgtcaattggagcccggaaaaaacaagaaatagacgacaatgcagctaaaactgatgtactcgaaagggaaaactgtgaagttttgccagttgctataaatgaaaagtctcgttcattctcttttgaaaaagaaagtaaagcaataaatggacgacttataagacaacgatcagaggaatacgtgtcacatattgattcagatattggattaggagtatctccatgtcttttgttaactgctcttactacttccaatgctgcagatggaatgtcattagagagattcgaaacaatcggagactctttcttgaagtttgctactaccgattatctctatcacacgttgcttgatcaacatgaaggaaaattgtcgtttgcacgtagtaaagaagtttcaaattgcaatttgtatcgactgggcaagaaattgggaatacctcaattgattgttgcaaataaattcgatgctcacgattcttggctgccaccatgctatattccaacttgcgacttcaaagctcctaacactgatgatgcagaagagaaagataatgaaattgaacgaattttggatggacaagtgattgaagagaaacctgaaaataaaactggatgggacattggtggtgatgtctcgaaaagcactaccgatggaatagagactattacattcccaaagcaagcccgtgttggtaatgatgatatctctccacttccttacaacttgctcacccaacagcatatttcggataaatcaatcgctgacgcagtcgaagctttgatcggagtacatttgctgacgttgggacctaatccaacgctgaaggtgatgaattggatgggactgaaagtaattcaaaaagatcagaagagtgacgtaccttcacctcttctacgattcattgacactccgaccaatccgaatgcttctctaaatttcttgaacaatttgtggcagcaattccagtttacacaattggaagagaaaattggatatcgcttcaaggaacgtgcttatcttgttcaagctttcacacatgcttcgtacatcaataatcgtgtcacaggatgctatcaaagattagaattcctcggagacgctgttctcgactatatgatcaccagatatttgtttgaagattctcgtcaatacagtccgggtgttctcactgatttacgatcagctctcgtcaataatacaattttcgcgtcgttagcagtgaaattcgagtttcaaaagcacttcatcgctatgtgcccagggctttatcacatgattgagaaatttgttaagctgtgctcggagcgcaatttcgatactaatttcaatgctgagatgtatatggtgactactgaggaagaaatagatgaaggccaagaagaggatattgaagttccaaaagcgatgggtgacatatttgaatcagtagctggcgccatttatctcgactctggacgtaatttggataccacttggcaagtgattttccacatgatgcgcgggactattgaattgtgctgtgcgaacccaccaagatcaccgattcgagagcttatggagttcgagcagagcaaagttcgattcagtaaaatggaacgaattctcgagagtggaaaagttcgagttacagtcgaggttgttaataacatgagattcactggaatgggaaggaactatcgaatcgcgaaagctactgctgcgaaaagagctttgaaatacctccatcaaattgagcagcaaagaagacaaagcccatcattaacaactgtttaaattacctcttcactttctgtgatatgctaagtattaagctatgtgtttctaggatctattgatctgattttcctaattctccaatttttactcgtttctattgaatttcatatgtattctgaaaatatacagttttacttgtt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]