2024-09-28 11:16:27, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_065592 1417 bp mRNA linear INV 11-JUN-2024 DEFINITION Caenorhabditis elegans ADP-ribosylation factor-like protein 6 (arl-6), mRNA. ACCESSION NM_065592 VERSION NM_065592.3 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1417) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 1417) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1417) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (23-MAY-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 1417) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003281). On May 27, 2020 this sequence version replaced NM_065592.2. FEATURES Location/Qualifiers source 1..1417 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="III" gene 1..1417 /gene="arl-6" /locus_tag="CELE_C38D4.8" /db_xref="GeneID:183311" CDS 17..589 /gene="arl-6" /locus_tag="CELE_C38D4.8" /standard_name="C38D4.8" /note="Confirmed by transcript evidence" /codon_start=1 /product="ADP-ribosylation factor-like protein 6" /protein_id="NP_497993.1" /db_xref="GeneID:183311" /translation="
MGFFSSLSSLFGLGKKDVNIVVVGLDNSGKTTILNQLKTPETRSQQIVPTVGHVVTNFSTQNLSFHAFDMAGQMKYRSTWESYFHSSQGVIFVLDSSDRLRMELLKDELMMVMEHKDVVSRGIPIVILANKMDIPGAMTASDITVALGLNLYRSGTWSIHSTCALTGDGLDKAMQQLSAEITKYMESRRT"
misc_feature 71..556 /gene="arl-6" /locus_tag="CELE_C38D4.8" /note="Arf-like 6 (Arl6) GTPase; Region: Arl6; cd04157" /db_xref="CDD:206722" misc_feature 86..109 /gene="arl-6" /locus_tag="CELE_C38D4.8" /note="G1 box; other site" /db_xref="CDD:206722" misc_feature order(92..112,161..166,230..232,404..409,413..415, 503..511) /gene="arl-6" /locus_tag="CELE_C38D4.8" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:206722" misc_feature order(92..97,107..109,119..121,161..184,248..250,263..265) /gene="arl-6" /locus_tag="CELE_C38D4.8" /note="putative GAP interaction site [polypeptide binding]; other site" /db_xref="CDD:206722" misc_feature order(122..136,143..175) /gene="arl-6" /locus_tag="CELE_C38D4.8" /note="Switch I region; other site" /db_xref="CDD:206722" misc_feature order(164..178,191..193,221..223,233..235,251..253, 257..265) /gene="arl-6" /locus_tag="CELE_C38D4.8" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:206722" misc_feature 164..166 /gene="arl-6" /locus_tag="CELE_C38D4.8" /note="G2 box; other site" /db_xref="CDD:206722" misc_feature order(167..190,218..220,251..253,260..265) /gene="arl-6" /locus_tag="CELE_C38D4.8" /note="putative effector interaction site [active]" /db_xref="CDD:206722" misc_feature order(176..196,203..220) /gene="arl-6" /locus_tag="CELE_C38D4.8" /note="interswitch region [active]" /db_xref="CDD:206722" misc_feature 221..274 /gene="arl-6" /locus_tag="CELE_C38D4.8" /note="Switch II region; other site" /db_xref="CDD:206722" misc_feature 221..232 /gene="arl-6" /locus_tag="CELE_C38D4.8" /note="G3 box; other site" /db_xref="CDD:206722" misc_feature 404..415 /gene="arl-6" /locus_tag="CELE_C38D4.8" /note="G4 box; other site" /db_xref="CDD:206722" misc_feature 503..511 /gene="arl-6" /locus_tag="CELE_C38D4.8" /note="G5 box; other site" /db_xref="CDD:206722" ORIGIN
agatctaaaaagatcaatgggcttcttttcgtcattgtccagtttattcggattgggaaaaaaggatgtgaacatcgttgtagttggactggataactcgggaaagactacaattttgaatcaactcaaaactccagagacaagaagtcagcagattgtgccaactgttggacacgtggttacgaatttcagtactcaaaatctcagttttcatgcattcgatatggcaggacaaatgaaatatcgtagtacatgggaaagctactttcactcttctcagggtgtcatttttgtactcgatagctctgatcgtcttcgaatggagttgctcaaagacgagttgatgatggtgatggaacacaaggatgtggtttcccgagggattccaatagtcattcttgccaacaaaatggacatccctggagcgatgactgcttcggatattacggtagctctaggcctaaacctgtatcgtagtggtacctggtcgatacactcaacgtgtgcactcactggagatggattggacaaggctatgcaacaactttcagctgaaatcacaaaatatatggaatcaaggagaacttgagaaattaaactgttttttgtaaacaatgcatgtgatcttgtaaattcttgtagaaaacctaccaaattcgtatcaattggcaaagctgtgtatttaaaaaatataatttagatttggaaacacatatgttaactgaaagagtaggactagatatgattttgtctaaatactcttaaaatgtcccaaaaatccaaatatctaaacatgtttaagatttttcaacttttccagtcaactttggcaaattgccaatttttttaccaatttggactttatgaaaaacttcgggcaattttgtaaatttgaacaatcacagcgtttaaatacatataatttaaatataattaaaatacaaaactattagaaatcatattttccggatttccaaaattatgtgctttgaaaactgaggaattgccactttttgtggactttggagaaaaaaaaatgttttcaattgttaaagatattttaccatcaagatctgatttttctaaccccaattttataaattaaaacaaaaagaactgaaaaaaaatcataaatttctagtcaaaaattactcagttttcacttatcatcattttggacgttgatcataagttgtattgtattgtatttattacgatagagttgttcaacaaatttggtaatttgccaaaaaatttgacaaaatagtccgaaaagttgtttcaattagatacttggttttttgtaatatgttttagttttagtatatttggtatgaaactccttacaattggagatgatgttcttttttccaatgttccacattttcctaataatccgttttatctttccttgaat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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