2024-09-28 11:19:49, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_065433 3537 bp mRNA linear INV 11-JUN-2024 DEFINITION Caenorhabditis elegans Heritable RNAi Deficient (hrde-1), mRNA. ACCESSION NM_065433 VERSION NM_065433.8 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 3537) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 3537) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3537) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (23-MAY-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 3537) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003281). On Feb 2, 2021 this sequence version replaced NM_065433.7. FEATURES Location/Qualifiers source 1..3537 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="III" gene 1..3537 /gene="hrde-1" /locus_tag="CELE_C16C10.3" /db_xref="GeneID:175535" CDS 7..3105 /gene="hrde-1" /locus_tag="CELE_C16C10.3" /standard_name="C16C10.3" /note="Product from WormBase gene class hrde; Confirmed by transcript evidence" /codon_start=1 /product="Heritable RNAi Deficient" /protein_id="NP_497834.1" /db_xref="GeneID:175535" /translation="
MADLLDKIMGSSSSNRIPKRDNRMNQDKDEPTSKRSAPMFSTPKSTTPIGRDSFATMDTMNVQMNMFPVDIKDMPHKIQRFQVDVIVCSSNGKQINANLGVLAAKGDVNSHNRRLAQYYIMRTVHDKLLVKFSGKSHHFLAYDCAATLYLPEGVYTGDDQEEVTLTIDDFPKEEWKFVSKLSRRKDDSYLVVLKPAGFVYTQGEVAQEEANRMELTRIIEIVTSQKLNNEDYLQFGNATFPRLSPPHSEPDAISEIRSGFAKVSRLSQNGGGKAFMTVDTKISPFYKDTSVIKFSSNKLSEMKGGGGGRGGYGRSDSRDSRGGYRGGRSDSRDFRGVYGNRGGNDRYRDESRGRRDMYDSRRDSGSSNGADYSPSDAAELEHAFGERGNTKRCIEEALKGLDVECTHLKGNLIRVSSIAENNAENTSFMMKDDKGEREVTVAEYFLLQYNIKLKYPRLPLVVSKRFKHESFFPMELLRIAPGQRIKVNKMSPTVQSAMTGRNASMPQHHVKLVQDILRDNLKLEQNKYMDAFGIKLMSTEPIQMTAKLLPPAQIKFKGQTYMPDMSRPAFRTQDKFVEPARIRKIGIVVFDNCIQMRQAEDFCDKLSNFCRDNGITVEKDSRDWSIRELNSSDSVAIQNLMKKWLDDRVDILVGIAREKKPDVHDILKYFEESIGLQTIQLCQQTVDKMMGGQGGRQTIDNVMRKFNLKCGGTNFFVEIPNAVRGKAVCSNNETLRKKLLEHVQFIGFEISHGASRTLFDRSRSQMDGEPSVVGVSYSLTNSTQLGGFTYLQTQKEYKLQKLDEFFPKCVRSYKEHSKTLPTRIVIYRVGAGEGNFNRVKEEVEEMRRTFDKIQPGYRPHLVVIIAQRASHARVFPSCISGNRATDQNIPSGTCVENVLTSYGYDEFILSSQTPLIGTVRPCKYTILVNDAKWSKNELMHLTYFRAFGHQVSYQPPSVPDVLYAAENLAKRGRNNYKIHQRYVNLQAVENRIIKDHSELINEDMREELAAAIVDEMSVAMNGMTIPKRNFWA"
misc_feature 1171..1446 /gene="hrde-1" /locus_tag="CELE_C16C10.3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1243..1245,1288..1290,1327..1329,1339..1341, 1393..1395,1414..1416,1420..1422) /gene="hrde-1" /locus_tag="CELE_C16C10.3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1624..2928 /gene="hrde-1" /locus_tag="CELE_C16C10.3" /note="PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component...; Region: Piwi-like; cd02826" /db_xref="CDD:239208" misc_feature order(1996..1998,2008..2010,2035..2046,2059..2061, 2098..2100,2107..2109,2119..2121,2131..2133) /gene="hrde-1" /locus_tag="CELE_C16C10.3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:239208" misc_feature order(2251..2253,2257..2259,2491..2493,2902..2904) /gene="hrde-1" /locus_tag="CELE_C16C10.3" /note="active site" /db_xref="CDD:239208" ORIGIN
tcaaacatggccgacttgctcgacaaaattatgggaagttcgtcttccaacaggattcccaaacgagacaaccgaatgaatcaggacaaggacgaaccgacgtcaaagagaagtgcaccaatgttctctactccgaagtcaacaacaccaattggacgggactctttcgcaacgatggacacgatgaatgttcagatgaacatgtttccagtggacatcaaggatatgccccacaagatccaacgctttcaagttgacgtcatcgtctgttccagcaacggaaaacagatcaatgccaaccttggagttttggcggccaagggagatgtcaattcccataaccgtcgcttggcacaatactacatcatgagaacagtacatgacaagcttctggtgaagttcagtggaaagagtcaccacttccttgcttacgactgcgctgcgactctctatcttccggagggagtctacactggtgacgatcaagaagaagtcacgttgacgatcgatgacttcccgaaggaagaatggaaattcgtgtcgaagttgtctcgcagaaaggacgattcttaccttgttgttctcaaacctgccggatttgtgtacacccaaggagaagttgcccaggaggaggctaatcgtatggagttgactcgtattatcgaaatcgtcacttcacaaaagctcaacaatgaggattacttacaatttggtaatgccacattcccacgtctttctccgccacactcggaacctgatgctatttcggagatccgctcaggttttgcgaaagtatctcgtctatcgcaaaacggaggtggcaaagctttcatgacggttgatacgaagatttctccattttacaaggatacatcagttatcaagttttcaagcaacaagttatccgaaatgaaaggtggaggcggtggaagaggcggatacggaagaagtgactcgcgagactctcgtggtggataccgtggcggccgttccgactcgagagactttcgtggtgtctatggaaaccgaggtggcaacgacaggtaccgagatgaaagcagaggacgtcgcgacatgtacgattcccgtcgagacagtggttcttcaaatggagcggactactctccgagtgatgctgctgagttggaacacgcttttggcgaaagaggaaacacgaagcgatgcattgaagaagcactcaaaggattggacgtggaatgcactcacttgaagggtaaccttattcgcgtatcctcgattgccgagaacaatgctgagaacacttcgttcatgatgaaggacgacaagggagaacgcgaggtcaccgtggcggaatatttcctgttgcagtacaacatcaagctgaaatatccgagacttcctctcgtcgtctcaaaaagattcaaacatgaatctttcttcccaatggagttgcttcgaattgctccaggccagcggatcaaggtcaacaagatgagcccgacagtacaatcggcgatgacaggaagaaatgcgtctatgccacagcatcatgtgaagttggttcaagatattctccgcgacaacttgaagcttgaacaaaataagtacatggatgctttcggaatcaaactgatgtcgactgagccaatccaaatgactgcgaagctcctcccaccagctcaaatcaagttcaagggccagacttacatgcctgacatgagccgtccagcgttccgcacacaggacaagtttgtcgaaccagcacggatcagaaaaattggtattgttgtctttgacaactgtatccaaatgagacaggccgaagatttctgcgacaagctgtccaatttctgtcgtgacaatggaatcacggtcgaaaaggactcgcgagattggtccatccgtgaattgaactccagtgattccgttgctatccaaaatctgatgaagaaatggctcgatgatagagtggacattcttgttggaatagcaagggagaagaagccggatgttcacgacatactcaaatactttgaggaatcgattggcctgcaaacaatccaattgtgtcaacagactgtcgataaaatgatgggaggtcaaggtggacgccaaacgattgacaacgtcatgagaaagttcaacctcaagtgtggtggaaccaacttcttcgtcgagatcccgaatgctgtgcgtggaaaagcagtgtgctcaaacaatgaaacattgagaaagaaacttctcgaacatgtacaattcatcggattcgagatttctcatggcgcatcacgcactttgttcgatcgcagtagatcacaaatggatggtgagccatcagttgttggagtctcgtattccctgaccaactcgacgcagctcggaggcttcacataccttcaaacccaaaaggagtacaaacttcaaaaacttgatgaattcttcccaaagtgtgtcagatcgtacaaggagcattcgaagacactcccaacaagaatcgtcatctatcgtgttggtgctggagaaggaaacttcaatcgtgttaaggaagaagtcgaagagatgcgacgaacatttgacaagattcagcccggataccgtccacatctcgtggtgatcatcgcacaaagagcttcacatgctcgcgtttttccatcatgtatcagtggcaacagagcgacggatcagaacatcccatctggaacatgtgtcgagaatgtcctgacatcctacggatacgacgagttcattttgtcttcacagacgccgcttattggtaccgttcgtccgtgcaagtacacgatccttgtcaatgatgccaaatggtctaaaaacgagctcatgcacttgacgtacttccgcgcattcggtcatcaagtgtcctaccagccaccatcggttccagatgttctttatgcggcagaaaatctggctaaacgaggacgcaacaattacaaaattcatcagcgttacgtgaatttgcaagcagttgagaaccgcatcatcaaagaccattcggaactcatcaacgaagacatgcgagaagaactggcggcagccattgttgatgagatgtccgttgcaatgaacggaatgaccattccgaagcgaaacttctgggcgtaatcccgagattctctcttttattgtcacgtattcaccccctttacatattaccaacattttttatccactaccctatacctactctctatacaagtacttaaattcccatgcttttgtttttctgaacattctttattacatttttccccataattgtatcgtattcccctttatgtttttataatttcaactaagaatccttttgtaatttaatctagagtagagtacattgacacatagtttgaatagtagatactcctgttttacctgcctttttttctgtgcgaatttcctccaactttcttattaggagttttcgaaggcgaaagaaacttccaattagaacgtttttggaaatttcgattttcaataatcttacttgctctaccccccgtccattatcatttattaagcaataaattattcgagaag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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