2024-09-28 11:17:41, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_059644 3055 bp mRNA linear INV 11-JUN-2024 DEFINITION Caenorhabditis elegans Argonaute protein wago-1 (wago-1), mRNA. ACCESSION NM_059644 VERSION NM_059644.8 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 3055) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 3055) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3055) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (23-MAY-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 3055) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003279). On Feb 2, 2021 this sequence version replaced NM_059644.7. FEATURES Location/Qualifiers source 1..3055 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="I" gene 1..3055 /gene="wago-1" /locus_tag="CELE_R06C7.1" /db_xref="GeneID:172463" CDS 25..2862 /gene="wago-1" /locus_tag="CELE_R06C7.1" /standard_name="R06C7.1" /note="Confirmed by transcript evidence" /codon_start=1 /product="Argonaute protein wago-1" /protein_id="NP_492045.1" /db_xref="GeneID:172463" /translation="
MSPHPPQPHPPMPPMPPVTAPPGAMTPMPPVPADAQKLHQSTGNDACIKRLQQLNVEDGAKMYMKPTEPGKMGRPVDIQTNVFGIEVTKETTVHRFMVHAKADLTSTKEVTFTKKGKEDFVVQDRRDKCCNIFFLAVEKNPEFFKMKDGNQIVYDGQSTLYTTVNLFSELDANGTKSKVFQINGADTGNDDLKTLPCISLEIYAPRDNSITLSSENLGKRTADQNIEVNNREYTQFLELALNQHCVRETNRFGCFEHGKVYFLNATEEGFDQRDCVDVGDGKQLYPGLKKTIQFIEGPYGRGQNNPSLVIDGMKAAFHKEQTVIQKLFDITGQDPSNGLNNMTREKAAAVIKGLDCYSTYTNRKRHLRIEGIFHESATKTRFELPDGKTCSIAEYYADKYKISLQYPNANLVVCKDRGNNNYFPAELMTVSRNQRVTIPQQTGNQSQKTTKECAVLPDVRQRMIITGKNAVNITLENELLVALGIKVYSEPLMVQARELDGKELVYQRSVMSDMGKWRAPPGWFVKPATVPDLWAAYAVGNPGCRFSIGDVNQLVGMFIDSCKKKGMVIKPPCETGLYSTEKIMTQLEKVAASKCKYVLMITDDAIVHLHKQYKALEQRTMMIVQDMKISKANAVVKDGKRLTLENIINKTNVKLGGLNYTVSDAKKSMTDEQLIIGVGVSAPPAGTKYMMDNKGHLNPQIIGFASNAVANHEFVGDFVLAPSGQDTMASIEDVLQNSIDLFEKNRKALPKRIIIYRSGASEGSHASILAYEIPLARAIIHGYSKEIKLIFIVVTKEHSYRFFRDQLRSGGKATEMNIPPGIVLDNAVTNPACKQFFLNGHTTLQGTAKTPLYTVLADDCKAPMDRLEELTFTLCHHHQIVSLSTSIPTPLYVANEYAKRGRDLWGELTTKGPIEAKESQGERLKELTKEIGYKQTDLNQKRVNA"
misc_feature 982..1314 /gene="wago-1" /locus_tag="CELE_R06C7.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1123..1125,1168..1170,1198..1200,1210..1212, 1264..1266,1285..1287,1291..1293) /gene="wago-1" /locus_tag="CELE_R06C7.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1816..2739 /gene="wago-1" /locus_tag="CELE_R06C7.1" /note="This domain is found in the protein Piwi and its relatives; Region: Piwi; smart00950" /db_xref="CDD:214930" misc_feature order(1852..1854,1864..1866,1897..1908,1921..1923, 1951..1953,1960..1962,1972..1974,1984..1986) /gene="wago-1" /locus_tag="CELE_R06C7.1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:239208" misc_feature order(2059..2061,2065..2067,2296..2298,2707..2709) /gene="wago-1" /locus_tag="CELE_R06C7.1" /note="active site" /db_xref="CDD:239208" ORIGIN
aactaatattgcaatagtaataagatgtctcctcatccaccacaaccgcatccaccgatgcctccaatgccaccagtcactgctccaccaggagctatgactccaatgcctccagttccagccgatgctcaaaagcttcaccaaagcactggcaacgacgcatgcatcaagcgtttacaacagttaaacgttgaggatggtgcgaaaatgtacatgaagccaaccgaacctggaaaaatgggcagaccagtggacatccaaaccaatgtcttcggaattgaagtcacaaaggaaaccacagttcatcgttttatggttcacgcaaaggccgatttgacttcaacaaaggaagtgactttcactaaaaaaggaaaggaggacttcgtcgttcaggatcgtcgcgataagtgttgcaacatctttttccttgcggttgagaagaacccggaattcttcaaaatgaaggatgggaatcagattgtatatgacggtcaatcaactctctacacgacggtcaacttgttctcagaactggatgccaacggtacgaagtccaaagtcttccaaatcaacggagctgataccggcaatgacgaccttaagaccctgccttgcatttctctcgagatttatgccccaagggacaactctatcacgctctcttctgaaaatctgggcaagcgtactgcggatcaaaacattgaagtaaacaatcgagaatacactcaattcttggaacttgctctgaatcaacattgcgtgagagaaacaaatcgtttcggatgcttcgagcacggaaaagtatatttcctcaacgccaccgaagaaggattcgatcaacgagactgtgtcgacgtaggagacggaaaacaactttatcctggcctcaagaagacgattcaattcatcgagggtccttatggtcgcggacagaacaatccatctctcgtgattgatggtatgaaagctgctttccacaaagagcaaactgtgatccaaaaactgttcgacatcacgggacaagatccttcaaatggactcaataatatgacccgtgagaaggctgcggcagtgattaaaggacttgattgctattcgacttataccaacagaaagcgccatctaagaatcgaaggtatctttcacgaaagtgccacaaagaccagatttgagttgcccgatggaaaaacttgttcaatcgccgagtactatgcggacaaatacaagatcagtctacagtatccgaacgccaatttggtggtttgtaaggatcgaggcaacaacaattacttcccggctgaactgatgactgtgtccagaaatcaacgtgtcaccattcctcagcaaacgggaaatcaatctcaaaagacaacgaaggagtgcgcggttcttccggatgtccgtcagcgaatgatcatcactggtaaaaatgctgtcaacattacactcgaaaacgagttgctcgtcgctcttggaatcaaggtttactcggagcctctgatggtccaagcacgtgagcttgatggaaaagaacttgtataccagagatcggtaatgtcggatatgggaaaatggcgtgcgcctccaggatggtttgtgaagcctgcgactgttcctgatttgtgggctgcttacgctgttggaaatccaggttgcagattctccattggagatgtcaaccaactcgtcggaatgttcattgattcttgcaagaagaaaggcatggtgatcaagccaccatgtgaaacaggactttacagtacggaaaaaattatgactcagctggaaaaagtggctgcgagtaagtgcaagtatgtcttgatgatcactgatgacgcaatcgttcacctccacaagcagtacaaagccttggaacagagaacaatgatgatcgtccaggatatgaaaatttccaaagccaatgccgttgtcaaagatgggaagagattgacgttggagaacatcatcaacaaaactaacgtgaagttaggtggtcttaactacactgtttcggatgcaaagaagagcatgaccgacgaacaattgatcatcggagttggcgtttccgcaccaccggctggaacgaagtacatgatggataacaagggacatcttaatccacaaatcattggcttcgcttcaaatgctgttgcaaatcacgagtttgtcggcgatttcgttttggctccctccggacaggacacaatggcatcaattgaagacgtgttgcaaaattcaatcgatttgttcgaaaagaaccgcaaagcgttgccaaaaagaatcatcatttatagaagtggtgcatcggagggttctcacgcttctattctggcttatgaaatcccattagcccgagctattatccatggttactcgaaagaaatcaaattgattttcatcgtcgtcactaaggagcacagttaccgattcttccgtgatcagcttcgttcgggcggcaaagccactgaaatgaatattcctccgggcattgtcttggataacgctgtcacgaatccggcatgtaagcagttcttcctgaacggtcacacgactcttcaaggaacagcaaagacaccattgtacactgttcttgctgacgactgcaaagctccaatggaccgcctggaggagctgaccttcactttgtgtcatcatcaccaaattgtttccctgagcacgtcgattcccactccactttatgtggcaaatgagtatgcaaagcgtggaagagatctctggggtgaactaacgactaaaggaccaattgaagcaaaggagtcgcaaggcgagcgcctcaaggaacttacaaaggaaatcggctacaaacaaaccgatctcaatcagaagcgcgtcaatgcatagatttggagctatgccacatacacttgatgttttacctaggataataattttacggtcacctaggataataattttacggtttttccgctagttttattgtaattttttagtcaaatgttttatatttttgtaatgtggttctgtgtgacccgtagtaattaaactcggtatgataaaagttttaggctgataa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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