2024-09-28 11:18:29, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001383877 831 bp mRNA linear INV 11-JUN-2024 DEFINITION Caenorhabditis elegans ShKT domain-containing protein (C15F1.1), mRNA. ACCESSION NM_001383877 VERSION NM_001383877.2 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 831) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 831) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 831) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (23-MAY-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 831) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003280). On Feb 2, 2021 this sequence version replaced NM_001383877.1. FEATURES Location/Qualifiers source 1..831 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="II" gene 1..831 /gene="C15F1.1" /locus_tag="CELE_C15F1.1" /db_xref="GeneID:182638" CDS 14..727 /gene="C15F1.1" /locus_tag="CELE_C15F1.1" /standard_name="C15F1.1a" /note="Confirmed by transcript evidence" /codon_start=1 /product="ShKT domain-containing protein" /protein_id="NP_001370980.1" /db_xref="GeneID:182638" /translation="
MSIHQTSFLLFTLFSLLSFSIAADTCRDFDNNCRDWITVNPNACDSTEYIKRSCLKSCGQCGEVDPKYDLRRLSQELTPIGFLVGKWRSEHGGKAIFPTIPKFTFGEEIEISIPGDAMQSAQALNYTAFAWSINDKDELHSEYGYISVKPNTKEVALTTVMNNGFVTVEEGPVNGNQIRFRLKDIGRISFSRDLPVHDLVREWTLLDRSTLQARLNMETLTHGMQEHTFIRYNKIEP"
misc_feature 89..196 /gene="C15F1.1" /locus_tag="CELE_C15F1.1" /note="ShK toxin domain; Region: ShKT; smart00254" /db_xref="CDD:214586" misc_feature 242..718 /gene="C15F1.1" /locus_tag="CELE_C15F1.1" /note="heme-binding beta-barrel domain of human THAP4, Arabidopsis thaliana nitrobindin, and similar proteins; Region: lipocalin_heme-bd-THAP4-like; cd07828" /db_xref="CDD:381185" misc_feature order(260..262,272..274,308..310,320..322,326..328, 338..340,344..346,383..385,389..391,395..397,401..403, 428..433,437..439,443..445,449..451,494..496,506..508, 551..553,557..559,599..601,608..610,614..616,620..622, 644..646,650..652,656..658,662..664,668..670,692..697, 701..703,707..709) /gene="C15F1.1" /locus_tag="CELE_C15F1.1" /note="ligand binding cavity [chemical binding]; other site" /db_xref="CDD:381185" misc_feature order(308..310,320..322,326..328,395..397,401..403, 428..433,494..496,506..508,599..601,608..610,614..616, 656..658,662..664,668..670,692..697) /gene="C15F1.1" /locus_tag="CELE_C15F1.1" /note="heme binding site [chemical binding]; other site" /db_xref="CDD:381185" ORIGIN
acttttcagagaaatgtcaatacatcagacgtcatttctattgttcacacttttcagtttattatcattttcaatagcagccgacacatgccgggactttgataataattgtagagattggattactgtcaatccaaatgcatgtgattcaactgaatatattaaaagaagttgtctcaagagttgtggacaatgtggagaggttgatcccaaatacgatttacgtcgtctttctcaggaactcacaccaattggtttcctagtagggaaatggagatctgaacatggaggaaaagcaatcttcccaacaattccgaaattcacatttggagaagaaatcgaaatttcaattccaggcgatgcaatgcaatcggctcaagctcttaactacacagcatttgcctggtcgataaatgataaagatgagttgcacagtgaatatggatatatttctgtgaaaccaaacacaaaagaagtcgcactgacaactgtaatgaataatggttttgtgacagtcgaagaaggtccagtcaatggaaatcaaattagattccggcttaaggatatcggaagaattagtttcagcagagatttgcctgttcatgatctcgtccgagaatggactcttctggatcgatcaacacttcaagcccgtctgaacatggagacattaacacatggaatgcaggagcacacatttattcgttacaacaaaattgagccataaactgaagaaaaacgtgtttatctctttctattccacttctagtcaactacttcccactcaattgattccccctttccccttaaaaataaaaactcttgctgctt
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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