LOCUS       NM_120663               1780 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana RING/U-box superfamily protein (ATL43), mRNA.
ACCESSION   NM_120663
VERSION     NM_120663.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1780)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 1780)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1780)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1780)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_120663.2.
FEATURES             Location/Qualifiers
     source          1..1780
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..1780
                     /gene="ATL43"
                     /locus_tag="AT5G05810"
                     /gene_synonym="MJJ3.23; MJJ3_23"
                     /db_xref="Araport:AT5G05810"
                     /db_xref="GeneID:830466"
                     /db_xref="TAIR:AT5G05810"
     CDS             229..1452
                     /gene="ATL43"
                     /locus_tag="AT5G05810"
                     /gene_synonym="MJJ3.23; MJJ3_23"
                     /inference="Similar to RNA sequence,
                     EST:INSD:ES130044.1,INSD:EH979131.1,INSD:EL091008.1,
                     INSD:ES194414.1,INSD:ES100220.1,INSD:ES047035.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BX829937.1,INSD:BT020620.1,INSD:BT021932.1"
                     /note="ATL43; FUNCTIONS IN: zinc ion binding; LOCATED IN:
                     endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc
                     finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4
                     RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana
                     protein match is: RING/U-box superfamily protein
                     (TAIR:AT2G20030.1); Has 8903 Blast hits to 8881 proteins
                     in 285 species: Archae - 0; Bacteria - 2; Metazoa - 2283;
                     Fungi - 641; Plants - 4839; Viruses - 72; Other Eukaryotes
                     - 1066 (source: NCBI BLink)."
                     /codon_start=1
                     /product="RING/U-box superfamily protein"
                     /protein_id="NP_196200.3"
                     /db_xref="GeneID:830466"
                     /db_xref="TAIR:AT5G05810"
                     /db_xref="Araport:AT5G05810"
                     /translation="

MSSSSLILLFSTLSLFLNVSLADNHTAVVITTSDTPPPLPPPSPPPRHNFTSSLMPGIAVVIAVLTAFFSLTFLLLLYVKHCKRRNGSVYVNHPQRFAITRYGGGYYNGGGVVGGRKNSGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLIGDCNSWFELQFSKDESNSVNNNPPGLTRFIPVSRISGRHSSAGERASRLNEIRTSSSYKSNPMSFRRSLDSSLKVNDAGEEKSESVAVNCLDRLQRKDGLLLIPNRESFEGRFEHRIIISGGNRDDQRWSEVRPSDLLYLRSEMILSDCRKLAAAEGGRDVINGRSVSELTGIERRRRWGGEPRQRQATAVISRWLAWSHRASASSIV"

     misc_feature    661..792
                     /gene="ATL43"
                     /locus_tag="AT5G05810"
                     /gene_synonym="MJJ3.23; MJJ3_23"
                     /note="RING finger, H2 subclass, found in rice E3
                     ubiquitin-protein ligase EL5 and similar proteins; Region:
                     RING-H2_EL5-like; cd16461"
                     /db_xref="CDD:438124"
     misc_feature    745..762
                     /gene="ATL43"
                     /locus_tag="AT5G05810"
                     /gene_synonym="MJJ3.23; MJJ3_23"
                     /note="putative active site [active]"
                     /db_xref="CDD:438124"
ORIGIN      

aaatttgtaaggcatgaaagatgaaagaagggagtcatgtttttaatgcatcctctttgtcctcattcactttgttttctttcccttttataaaaacctctctccctatctcacacactcacaaaagtgtctcccttattttcaggcacttcaaaataaatatacgaaaataaaataaccatttcttaagtctaaagaccttctctttcaactagaagcctttaagccatgtcttcttcttccttgatacttctcttctctactctctctctctttctcaatgtctcactcgcagacaatcacacggcggttgttataacaacctcagatactccaccgccacttcctccgccttctccaccgccacggcataacttcacttcctctctcatgcccggaatcgcagtcgttatcgccgtcctcactgcgtttttctctctcactttcttacttctcctctacgtcaaacactgtaaacgacgaaacggcagcgtttacgtaaaccacccgcagcgtttcgcaatcactagatacggaggaggatattacaacggtggaggagtagtaggaggaaggaaaaactccggtatagaccggtccgtgattgaatctttaccggttttccggtttggtgcattaagcggtcacaaggatggtttagagtgcgccgtgtgtctcgctcggttcgaaccgacggaagttctgaggttattgccgaaatgtaaacacgccttccacgtggaatgtgttgacacgtggcttgacgctcactccacttgcccgctttgccgttaccgggtcgacccggaagatatactcttgatcggtgattgtaactcctggttcgagctccagttctctaaagatgaatcaaacagtgttaataataatcctcccggtttaacccggtttattccggttagtcgaatttccggtcgtcattcctcggctggtgaacgagcgagtcgactcaacgagattagaacatcttcgtcgtataaatcgaatccgatgtcgtttcggagatcactcgatagctctctgaaagttaacgacgccggcgaggagaaatcggaatctgtcgccgttaattgcttggatcgtctacagagaaaagacggattgttgttgattccgaatcgggagagctttgaggggagatttgagcaccggataattatctccggcgggaatcgagacgatcagaggtggagcgaagtaaggccgtcggatcttttgtatttacgatcagagatgatactcagcgattgccggaaattagctgcggcggagggtggcagagatgtaattaacgggagaagtgtgtcggagttaacgggaattgagagacggaggagatggggaggagagccgagacaacgacaagccacggcggtgatttcgaggtggctcgcttggtcccaccgtgcctccgcttccagcattgtttaaaatttatattatgatccttttagttttgttttataacagttttggccggtttagttttgttctataacatttagcccaaactaatttattagaggaatgcaacaatggcaggtagggataaattagtgttgttcttttttttttttgaaatgcgaattttttggagtatgcacgagtgcaaggaagcacaaatgatttctttttgtattttaatttttgaggaaatattaaggaaagtgaaaggttgagttttttaaaattaatgtctttcttggtgtaataaagggcgagtattggggatctgataactaagtttaaatagaaaaag

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