LOCUS       NM_115076               1530 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana 3-ketoacyl-CoA synthase 15 (KCS15), mRNA.
ACCESSION   NM_115076
VERSION     NM_115076.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 1530)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1530)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1530)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On Sep 12, 2016 this sequence version replaced NM_115076.3.
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..1530
                     /gene="KCS15"
                     /locus_tag="AT3G52160"
                     /gene_synonym="3-ketoacyl-CoA synthase 15"
                     /note="Encodes KCS15, a member of the 3-ketoacyl-CoA
                     synthase family involved in the biosynthesis of VLCFA
                     (very long chain fatty acids)."
                     /db_xref="Araport:AT3G52160"
                     /db_xref="GeneID:824381"
                     /db_xref="TAIR:AT3G52160"
     CDS             78..1433
                     /gene="KCS15"
                     /locus_tag="AT3G52160"
                     /gene_synonym="3-ketoacyl-CoA synthase 15"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR379880.1,INSD:DR280260.1,INSD:EH881610.1,
                     INSD:DR280262.1,INSD:DR280259.1,INSD:EL283292.1,
                     INSD:DR280261.1,INSD:DR280263.1,INSD:DR280264.1,
                     INSD:AV530749.1,INSD:DR280258.1,INSD:DR280256.1,
                     INSD:DR280257.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:DQ446759.1,INSD:AY084713.1,INSD:DQ653147.1"
                     /note="3-ketoacyl-CoA synthase 15 (KCS15); FUNCTIONS IN:
                     transferase activity, transferring acyl groups other than
                     amino-acyl groups, catalytic activity, acyltransferase
                     activity; INVOLVED IN: lipid biosynthetic process, fatty
                     acid biosynthetic process, metabolic process; LOCATED IN:
                     membrane; EXPRESSED IN: 6 plant structures; EXPRESSED
                     DURING: petal differentiation and expansion stage, E
                     expanded cotyledon stage; CONTAINS InterPro DOMAIN/s:
                     Thiolase-like (InterPro:IPR016039), Very-long-chain
                     3-ketoacyl-CoA synthase (InterPro:IPR012392),
                     3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
                     C-terminal (InterPro:IPR013747), FAE1/Type III polyketide
                     synthase-like protein (InterPro:IPR013601), Thiolase-like,
                     subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana
                     protein match is: 3-ketoacyl-CoA synthase 10
                     (TAIR:AT2G26250.1); Has 4252 Blast hits to 4241 proteins
                     in 1006 species: Archae - 0; Bacteria - 1239; Metazoa - 0;
                     Fungi - 2; Plants - 2897; Viruses - 0; Other Eukaryotes -
                     114 (source: NCBI BLink)."
                     /codon_start=1
                     /product="3-ketoacyl-CoA synthase 15"
                     /protein_id="NP_190784.1"
                     /db_xref="GeneID:824381"
                     /db_xref="TAIR:AT3G52160"
                     /db_xref="Araport:AT3G52160"
                     /translation="

MEKEATKMVNGGVKSKSPKGSPDFLGYNLRYVKLGYIYLLSLSRTFCFFLPPLLLLFIFVSRFLPILAFPLSTFFILLIYHYLTPSSVFLLDFSCYRPPDHLKITKSDFIELAMKSGNFNETAIELQRKVLDQSGIGEESYMPRVVFKPGHRVNLRDGREEAAMVIFGAIDELLAATKINVKHIKILVLNCGVLNTTPSLSAMVINHYKLRHNTESYNLGGMGCSAGVIAIDLAKDLLNAHQGSYALVVSTEIVSFTWYSGNDVALLPPNCFFRMGAAAVMLSSRRIDRWRAKYQLMQLVRTHKGMEDTSYKSIELREDRDGKQGLYVSRDVMEVGRHALKANIATLGRLEPSFEHICVLASSKKVLDDIHKDLKLTEENMEASRRTLERFGNTSSSSIWYELAYLEHKAKMKRGDRVWQIGFGSGFKCNSVVWKALKNIDPPRHNNPWNL"

     misc_feature    114..1424
                     /gene="KCS15"
                     /locus_tag="AT3G52160"
                     /gene_synonym="3-ketoacyl-CoA synthase 15"
                     /note="3-ketoacyl-CoA synthase; Region: PLN02192"
                     /db_xref="CDD:215123"
ORIGIN      

gccatctttctgttacactgactcatatttatttgattatttattgagagaccacaaggttttgatgcttagtgaaaatggaaaaagaggcaacaaagatggtgaatggtggagttaagtcaaagtcacctaagggcagtcctgatttcctcggatataatttgagatatgtcaagcttggatacatttaccttctctctctctcacgtaccttttgtttcttccttcctcctcttcttcttctcttcatctttgtttctcgatttctcccaatcttggctttccctttgtctaccttcttcatcctcctcatctatcattatcttactccttcctctgtttttcttctcgatttctcctgttaccgcccacccgatcatctcaagatcacaaaaagcgacttcatcgagctggcaatgaagtctggtaacttcaacgagactgccatcgagcttcaaagaaaagtgctggaccaatcagggataggagaggagagctacatgccgagagtggtcttcaagcctggtcacagggtcaatcttcgtgatggtcgtgaagaagcagcaatggtgatctttggagcaattgatgaacttcttgcagcgaccaaaatcaatgtgaagcatatcaagatcctggtgctaaactgcggagtcctcaacaccacgccatctctatcggccatggtgattaaccattataagctgaggcataacacagagagctacaatcttggtggtatggggtgtagcgccggagtcatagccattgatttagccaaagatcttttaaacgctcatcaaggctcttacgctttggtggtgagcactgagatagtaagcttcacttggtactcaggtaatgacgtcgcgttgcttccaccaaattgcttctttcgaatgggagcagctgcagttatgctatctagtcggcgtatcgacagatggcgagccaaataccaacttatgcagctagtaagaacccataaaggcatggaagacacaagttacaagagcatagagttaagagaagacagagatgggaaacaaggactatatgtatctagagatgtaatggaagttgggcgccatgcactgaaagcaaacattgcaacgcttggtcgtcttgagccttcctttgaacatatatgcgtattagcatcgagtaagaaagtacttgatgacattcataaggatctcaagttgacagaagagaatatggaggcatcaagacggacattggagcgtttcgggaacacatcaagcagcagtatatggtacgagctggcttacctagaacacaaggcgaagatgaaaagaggagatagggtttggcaaatcggtttcgggtcagggtttaaatgcaatagtgttgtatggaaagccctaaaaaacattgaccctccaagacataacaacccatggaatctctgaggattcatcaaagttaacaattgtatgataacatgaataaaataacccaccaatgcaaaatccacaatttattcaaatagtgtgattgcatttgaac

//