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Previous release (v1)
2025-12-08 10:47:50, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS NM_101175 1476 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana proline-rich receptor-like kinase (AT1G13050),
mRNA.
ACCESSION NM_101175
VERSION NM_101175.5
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1476)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 1476)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1476)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1476)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 1476)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
On Sep 12, 2016 this sequence version replaced NM_101175.4.
FEATURES Location/Qualifiers
source 1..1476
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..1476
/locus_tag="AT1G13050"
/gene_synonym="F3F19.7; F3F19_7"
/db_xref="Araport:AT1G13050"
/db_xref="GeneID:837862"
/db_xref="TAIR:AT1G13050"
CDS 302..1255
/locus_tag="AT1G13050"
/gene_synonym="F3F19.7; F3F19_7"
/inference="Similar to RNA sequence,
EST:INSD:EG420031.1,INSD:EG462885.1,INSD:EG420026.1,
INSD:ES112351.1,INSD:EG419861.1,INSD:EG462819.1,
INSD:DQ263295.1,INSD:EG463018.1,INSD:EG419859.1,
INSD:EG420035.1,INSD:EG462996.1,INSD:EG462963.1,
INSD:EG462985.1,INSD:EG462896.1,INSD:EG420034.1,
INSD:ES112754.1,INSD:EG462941.1,INSD:DR381438.1,
INSD:EG420028.1,INSD:EG419855.1,INSD:EG463029.1,
INSD:EG462930.1,INSD:EG462796.1,INSD:EG420023.1,
INSD:EG463007.1,INSD:EG462952.1,INSD:EG462974.1,
INSD:DQ263294.1,INSD:EG462918.1,INSD:DR351231.1,
INSD:EG420024.1,INSD:EG419860.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX815333.1,INSD:AY800578.1"
/note="unknown protein; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G26350.1); Has 538
Blast hits to 510 proteins in 88 species: Archae - 0;
Bacteria - 23; Metazoa - 81; Fungi - 36; Plants - 361;
Viruses - 8; Other Eukaryotes - 29 (source: NCBI BLink)."
/codon_start=1
/product="proline-rich receptor-like kinase"
/protein_id="NP_172764.1"
/db_xref="Araport:AT1G13050"
/db_xref="GeneID:837862"
/db_xref="TAIR:AT1G13050"
/translation="
MSHHHYETNPHFVQFSLQDQHQGGPSSSWNSPHHHQIPQAHSVAPPRVKIKTRGRHQTEPPETIHESPSSRPLPLRPEEPLPPRHNPNSARPLQLSPEEQRPPHRGYGSEPTPWRRAPTRPAYQQGPKRTKPMTLPATICCAILLIVLILSGLILLLVYLANRPRSPYFDISAATLNTANLDMGYVLNGDLAVVVNFTNPSKKSSVDFSYVMFELYFYNTLIATEHIEPFIVPKGMSMFTSFHLVSSQVQIQMIQSQDLQLQLGTGPVLLNLRGTFHARSNLGSLMRYSYWLHTQCSISLNTPPAGTMRARRCNTKR"
ORIGIN
tacgttgttacctttctctctctctttttcttggtactttaaccaaaaaaatgagagaattaggacccagtatttacattttctgtttcaaaacttttagatgagaaataagagatgatggttctagttttgcttgcttgaatatgaaaaaagattacttgcttccttgtgtcagtttcctttaacacaagaatcctacttaaacttctcaccaagtaatcatctctctcatttggaaacactcaaaattttctctcttcattgctttcacttaactcttttctcctttagttgtacttcaatgtctcaccaccactatgaaaccaaccctcatttcgttcaattttccttgcaggatcaacatcaaggtggtccttctagctcatggaactctccgcaccatcaccagatcccacaggctcactcagttgctccacccagggtgaaaataaagactcggggacgccaccagactgagccacctgaaacaatccatgaatcgccttcctcaagacccttgccactgagaccggaggaaccattaccaccacgccataatccaaactctgccaggccattgcaattgagccctgaggagcaacgacctccacaccgtggctatggatctgaaccaactccatggagaagagctccaacacgaccagcttatcagcaaggcccaaagaggaccaaacccatgacattgccagccacaatctgctgtgcaattctcctgatcgtcctaattttatcaggtctcattctcctcttagtctacctcgccaaccgtccacgctcaccatacttcgacatctcagcagcaaccctaaacaccgccaatctggacatgggatatgttctaaatggagatctcgcggttgtggtaaacttcacaaatccaagcaagaaaagcagtgtggacttcagctacgtgatgttcgagctctacttctacaacacactcatagcgactgaacacatcgagccattcattgtaccaaagggaatgtcaatgttcacaagcttccatctcgtcagcagtcaggtacaaattcagatgattcagagtcaggacttgcagctgcagctcggaactggtccagtgttgttgaatttgagaggaacgtttcacgctcgctcgaaccttgggtcgttgatgagatactcttattggttgcacacacagtgcagcatctctttaaatacccctcctgcagggaccatgcgagcaagaagatgcaatacaaaacgctagcgatttgcagcatttctgactgaatacattgcttcttttcttgatgcgtttgatgataatataggcaaatagatagtttttgtatttttctgctacttttagaaataacaaaatgacaaaggggaaaatgcatttgattttgtatttcgaattatagaattgatcttaaattgtatgtaatttgattataatattagagatgaagatatattatctaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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