2025-08-29 15:51:04, GGRNA.v2 : RefSeq release 231 (Jul, 2025)
LOCUS XR_011960403 3749 bp RNA linear VRT 25-MAR-2025 DEFINITION PREDICTED: Chiloscyllium punctatum NRDE-2, necessary for RNA interference, domain containing (nrde2), transcript variant X2, misc_RNA. ACCESSION XR_011960403 VERSION XR_011960403.1 DBLINK BioProject: PRJNA1234630 KEYWORDS RefSeq. SOURCE Chiloscyllium punctatum (brownbanded bambooshark) ORGANISM Chiloscyllium punctatum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Hemiscylliidae; Chiloscyllium. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_092742) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_047496795.1-RS_2025_03 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 03/19/2025 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3749 /organism="Chiloscyllium punctatum" /mol_type="transcribed RNA" /isolate="Juve2018m" /db_xref="taxon:137246" /chromosome="4" /sex="male" /tissue_type="liver" /dev_stage="juvenile" /collection_date="2015-08-25" gene 1..3749 /gene="nrde2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:140476075" misc_RNA 1..3749 /gene="nrde2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X2" /db_xref="GeneID:140476075" ORIGIN
ccccaatcaatcctcctccaccttcctccttgcgtcccaacctggacttccagcatttttccgttcgtgctgccgatcgcgttttgcgcacggatctacttcgccgaggcggatggttacggtttggtcgggagggacggagcagctgcagtcctcatttttgccttggtccttacatccccgctctgcgatgtatctcaatggacccaaaaccacgaggactacaattcccatgatgcagcccgtgagccgcgtgggacgtcatctttgtgcgacgcctgcgaccgtgtttgtcaagttcgcggcctgtggagaatggagccgctgccgggctccttgttcccggcgttcggtgtgagggagtcccgctgtccaagtggctctggcggattggattggctcagtaatcaaagcttccgcactgaagatgccctgcaactgcaccatcgtatcgtgggtgatgcagcagacacaacccaggggtcaccccaggcaagtgatcattcagggatatctgggggagttttggatcaaggcgaacaagatgcaccggccaaaaagaagaagaaaaagaagaaacatcggcagcacagaaaggataagaggaaggacagagcgattcacaccggcagcgaatctgatcctgaactcttccgagataaagacacggagactcctgcagagaggtctgacgccggtgctggtcttcctcagggtcaattcatgtggctggatgacctccatctgcaaactgcacagaccttctgtatagacagaaaagctgatcctgccaactgggagtacaagtcactctatcggggagatttggcaagatacaagaggtgtggggatgtctgccttggccttgacaccagaaagcagcacattatctgggaagattcaccccgaccaaagaaaaaggccaggaagagggatgatcgatactacacctcatcgggccttcagtccctgagcactggccctgttcctgttcgctgtagagagtgtgtgcaaggaagcattcctgtgcctggcacaaactccttcataccagttccagactgggcagagattgaaagtaaacccttaggcactgtcacctggttcaatccacttggaatttacgatgaatccactactttgtggctccagggaaaaggccgagaggagccggagaagcaagcctgcgtgccctctgatagcagtgagaagatcaactcagtaaacatggccaaagtggagacgttcaataggatgttgagagaagaccctgggaatgtccaaacctggatggagtttgttcattttcaggatgaattaatacaggacccaagtccgtacatgacctctgcagctgagtctgagaaacggaagaggtcccgaagggctgtctgggagaaaaagctggccattttggaacgagccattgagagcaatcccaacaatgtggagctgaaagtagcccggctggagctcggcaaagaatcttgggagccatccattctggtcaacgaatggaaaaaggtggtctttctacacccaaacgacaccactctgtggcagaggtacctgctgttctgccagagccagttcagcaccttttcgacatccaaggtcaatggtatctatggcaagtgcctgagtaccctggcagctgctctggatggtaccctattgtcccatcctgcactgcctgacacagaggaagccatgcttgcaattttcctgcagcagtgtcacttcttgcgacagactgggcattcggaaaaagccattgccctcttccaggctctcattgacttcaccttcttcaaacctgacagtgttgctggcctgataaccaaggcacaggtggagttctttgaaccgttctgggacagtgatgagccccggtttggagaaggaggggcaagaggttggagagtttggatgcgacagcaagaaaggggcggctgggttgtcctgaatgagaaaggcgacgatgaggatgaggaggaagatggggaggaggtcacagacaagacactacccaagtggcagctttggttgcatgtggagagcagccgtgactccaagcactgtttgccatggcgagctggtaaggcgaagggtcagactgaagaagactgtgaggatcctgacagacaggtgctgtttgatgacattggttcttcaatgttcaaagtatccagcccagaactgaggttccagctcatatcatcgtttttccagttgctgggaattccaacaggattcagcctgcctccgtgctgcctgaatgtggtgctggatgatcctggtttgtttgactgtggctcagctgatgagagacctctgtcttgctgtccccctccagctgctggggtcagcaccatcggcttcctgccagcaatgtctaatgccaggcagccagtcagccactgcccagaaggggaggacttcatacaaaccgcgtttcaccaggcgttgcctctgttcgctgggaaagagcggtcagagctcgccctgtactggctgcagtatgaaaaatcaaaggtcgtgaggagcctgcagctcaggagaaagaagcagctgaaatctctggggaagaggagcaagaaactcgctaaaaaccttctgaaggagggtgaaaaccggaataatctgtccctgtggagggaatatgcccatttggaatggctgctggggaacgtggaggactcgagaagggtttttgacacagccattgctatgtctgtctctcagggcctgcagagctccaccctgtgtgacctctgcttcctgtactcctcactggagctggagtcagtgcggagcatcagcgcgtcaacgacagtgcgggcggtttatatcctcaccagcctcgccctgggtaccacctactcgccttacgcaggtgaggtgctgccggttaatgtgctgaaggctcgaaaaacatacgagcgatctttccgggacctgcccacccacgatgcaactttatccggcagtcagaggcctggccagctcataagcctgataggctgctttgccctcttccagtacctcacgctgggcattcaggctgccgactcactgtacaggcaggcagctgagaagctcgtagacctctcctcactggaaaaggcccagcccaagccgagcgtgtggcgccagagtgtgatgtgtgtgttggagaggctgactgtgatgcacgtgaggctgctgaggtttcacatgcaggccagtgtgtatcccctgggccctgtccgccacacgctcacacacgctctgggccagtatcctggcagccgccagctctggaagctctacacgcaggttgaaagccgctctcacgatgccagccgagcccgaaggttcttcgacgccaccgccaggtcagcgcaagacctcatcgtgccgcggctgtttgccatctacgcagaagagcgaagaaaggagcgtgtcgacactgtgcagcgatgttgggattttgtacaacactctcccagaaactggcctcaccaaccggatcagagcattgtttgagcacgctgttcagacagaggctggtgcacactctgttttactttggaggatgtacctgaacttcacggtgactcaaggaaacattgagaagacaaagggtgtattttacagagcactgcaggcgtgcccatgggccaaggtgctatacttagatgcagtcagccacttacctggacaactccaagaaataatagacttaatgacggaaaaggagattcgga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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