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2025-08-29 15:51:02, GGRNA.v2 : RefSeq release 231 (Jul, 2025)

LOCUS       XR_011559245            4075 bp    RNA     linear   VRT 04-JAN-2025
DEFINITION  PREDICTED: Erythrolamprus reginae NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X2,
            misc_RNA.
ACCESSION   XR_011559245
VERSION     XR_011559245.1
DBLINK      BioProject: PRJNA1203666
KEYWORDS    RefSeq.
SOURCE      Erythrolamprus reginae (royal ground snake)
  ORGANISM  Erythrolamprus reginae
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata;
            Toxicofera; Serpentes; Colubroidea; Dipsadidae; Erythrolamprus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091950) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_031021105.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/31/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4075
                     /organism="Erythrolamprus reginae"
                     /mol_type="transcribed RNA"
                     /isolate="rEryReg1"
                     /db_xref="taxon:121349"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="kidney"
                     /dev_stage="adult"
                     /geo_loc_name="Colombia: Leticia, Amazonas, Reserva
                     Natural Tanimboca"
                     /lat_lon="4.12 S 69.95 W"
                     /collection_date="2021-01-21"
                     /collected_by="Valeria Ramirez Castaneda"
     gene            1..4075
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, 1 Protein"
                     /db_xref="GeneID:139168166"
     misc_RNA        1..4075
                     /gene="NRDE2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
                     /db_xref="GeneID:139168166"
ORIGIN      
cgccttccttgccctatggctgaaggcggcagcggaagtcatcgttctggaggtttttcgcggcctctacggtgatggctctttttcctgcttttgccgatgttgctaacgccgaggacgtacaagcaagcgaaggctcgagcagagatttgaactggctgacaaatcaaagtttctgcaatgaagatgcactgagattgcaccaaaatgttttagaaattacccactgtgcttctccactccaaagcaatacagccaccagttctgaactccccagagaaaatgaagcctacaaaagtgttcaagcgtcacctaaaaaaagaaagaaaaagaaaaagcaacgagatcacaagaaaaataaaaagaaaagaaagaaagaatggaccactagtggttctgaattagaggatgggagagatgatagaaataatgaaaaaagaggaacagaattgaacttagaagaaaaaaacacaaatgtgccctattcctctacttggcttgatgacgttcagggtttgacaaacgaaggattcagaactgataagaagccagaccctgcaaattggcaatataagtcgttatatcgaggcaacattgcaaggtataagagacgaagcaacttctgccttggccttcaacctaaggagcaacgtattatttgggaaagctcagcagcaaaaaaaacttcattgtataagcgaccagaacgctacttcacaaaaggtggtcggaaactgctgaacgaagaaggcattcatgtcagcggtaaaaatcagaattcctcatctggctcagcctcctggataccaattttgcaactagatccagcagaggctcctccgacatgctcggtaaaccctcttggagtttatgatctgcagaccacactgtggctacaaggaaaagggccctctgctgaagaaggcttaccaaataagcaagaccctcaagaaaactcccagaatgtaagctccccactaatggcaaaggtggaagaatataactgcaaagtcagagagaatcccagggatgtcaaagcatggatggatttggtttcttttcaggatgagctcatgagacatcctagctgttatgccatcagtgagggagaacgggaaatgaggaaagtatcatccaagctaatactagagaagaagctggctattttggaaagagcgatagaaaacaacccaaatgaagtggacctgaaaatagcacggctgaatctttgcatagagttctgggagccatctgctgtgttgaaggaatggcaaaagttgattttcttgcatccaaacaagccagccctgtggcagaaatatctcttattctgccaaagtcagttcagcacctttacggtctccaaaacgcatggctgctatggaaaatgcctgagcacattatcagctgtgaatgatggcagtatgttatcccatcctgcactgccaggcacagaggaagccatgctagccatttttcttcagcagtgccatttccttaggcaggctggccattcagaaaaagctgtgtccctgttccaagcgctgctagactttaccttttttaaaccagataatgtcaaagatctgccaacaagaggacagagggaattctttgaacccttttgggacagcggagagcctcgagttggagaaaaaggagctaaaggttggaaggcctggatgcatcaacaagagaaagggggctgggtgctcatcaacccacccgatgaagatgaggaagatgaagaggatggagaagaaataaaggatagatctctaccaaagtggcaaaactggcttcatgttgaacgttcccgggaagccagacactggttgccctggcgtccagaaaagaacaagaaacagtcattagaagattgtgaagatccagagaggcaggtcttatttgatgaccttggaccatcattgataagactttccagccctgagcttcagtttcaagtactctcctcatttttgcaattcttgggagttccatgcagctgtagacttttgccaccttctttctatatagcgatggatgaaaataactcatttgacactgggtataacaagcaaggaattctgacttctttagatatgcctgtatttggagtcagtaatattggtcatatggactcaatggcccaaggagagaagcatgtgactcactctaaggaaggagaacaatttattcaaaaccttttccatatgatgctgcccttattttcaggcaaagacagatctaacctatgcgttttttggcttcagtatgaagtcactaaggtcactcagtatttgaaaatggaaaagaaaaagaaactaaaattagaaggcaagaaaagcaaaaaattagctaaaaatcttcttaaggcacctgacaacagaaataatgtttcactttggcaactatatgcttacctggagtggctacttggcaatatagaagatgctagaaaagtttttgatacagctttgggaatggctggaattagtggcatccaagacccccaattctgtcatcttagccttctttatgctaaactggaagcagaattactagtcaatctagaaggagctgtagaatcacgtgcaacatacatattgaccaaactggctgaaaagggaccttacgttccctataatggacaagtatcatcagtgaatgttctgaaagctcggaaaacatatgagcacctacttcaagattgtttaactgaaaacctcacttctgatcaagaatgtgctagtgattccagccatctgattggtttggttggttgttatagccttttccaatatttaactcttgggattgactctgcaatgtcaatatatcatcaggtttctcaaaagctgaaagacaaggatcctggagaaaggcttagtggtcaacatttcactactacgcctcttgaagccctctccctcatgcatgtaagcttgctccggttccacatgaaaatcagtgtgtatcctttgagtcttctccgtgaagtactgttggaggttttaaagaggtatcccagcaaccagtctttttggagttcatacatccagatccaaagcaagtctcacaatgctagcaaagcccggcgtttttttgatgctgttacaagaacgacacaattggtggagccttggctgtttgcaatccagctggagcaaatgaggaaaaaactaattgaaagggtccagaggtaatgtcatctccataacgatggtcagggagccgactggagatgtgtatgccaccattcctgaaattgggttaacaaatcgaatcaaagctttatttgaacatgcaactcagactgaaaacggtgcccattgtccattgctctggaggttgtatatatgcttcgtggtttctttgggagataaggcaaaaagtaaaggcatattttacagagcgcttcaaaactgtccctggacaaaagtgttatatatggatgctatagaatactttccagatgagctgcaagagaccctcgatctaatggctgagaaagaactgcgagtacgggtaccaatagaagaattggagctgctacttgaagactgaagaaagatacaaagacaaatgatcagcctgttgatataatgaaccttcaatatagctagggagaaaatgtttatgattaatttagcatctgtaaaaatatatagaataagagtttatttttttatccaaacatgtattccattaagtgcaggtatgggtaagactctttagtaacactcgcaactgtctcattgttaaaaatactagtccaattatataagccaaatacatttaggataaagtccagttgaatgggaagttgtttgcttccagttgattctgattttatggatgactttttattccagattgaaattccttggaattgtacaggttgtttaaacttgtggaaatatgcagcaatttgagagtttagtagaaacctttaattaatgaaggaacctgtaactgaaggtttatcagtttattgtgacaaaggaccggtgaaatgtaaatatctttgtaaatatatataaaagttctattggaatgtggaatcttttaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]