2025-04-03 19:41:12, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XR_009719614 492 bp RNA linear INV 07-DEC-2023 DEFINITION PREDICTED: Saccostrea echinata uncharacterized LOC133177149 (LOC133177149), transcript variant X2, ncRNA. ACCESSION XR_009719614 VERSION XR_009719614.1 DBLINK BioProject: PRJNA1046542 KEYWORDS RefSeq. SOURCE Saccostrea echinata ORGANISM Saccostrea echinata Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Saccostrea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026889835) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_033153115.1-RS_2023_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..492 /organism="Saccostrea echinata" /mol_type="transcribed RNA" /isolate="AGI-Se365-2" /db_xref="taxon:191078" /chromosome="Unknown" /tissue_type="muscle" /ecotype="Australia" /geo_loc_name="Australia" /collection_date="2022" gene 1..492 /gene="LOC133177149" /note="uncharacterized LOC133177149; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:133177149" ncRNA 1..492 /ncRNA_class="lncRNA" /gene="LOC133177149" /product="uncharacterized LOC133177149, transcript variant X2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:133177149" ORIGIN
aaactagaactgtccaaacgggacaaaataccccccgctgggtttttcagaagtacgtttttccataataaagatatgtatcaaacacaaattatgaattttttcttccagtgaccttgaacttccccaaatgaccttgggtcaaggtcatgacacacctttgggtcatgggcaatctttgtgtgaaatgagaacctaccaagtttttccataataaagatatgtatcaaacacgaattatgaaatttttcttccagtgaccttgaacttccccaaattaccttaagtcaaggtcatgacacacccttaggtcatgagcaatcttagtgtggagtagtagattctaatgtccctttgtaagaaagatatggaccggacacgattgcacagacagacggacagctagacagacggacaaacagacggacggacggacagacggacaaggtgattcctatatacccccccaaacttcgtttgcggggggtataa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]