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2025-06-10 11:11:41, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XR_008431296            3512 bp    RNA     linear   VRT 06-MAR-2023
DEFINITION  PREDICTED: Vidua chalybeata NRDE-2, necessary for RNA interference,
            domain containing (NRDE2), transcript variant X3, misc_RNA.
ACCESSION   XR_008431296
VERSION     XR_008431296.1
DBLINK      BioProject: PRJNA940449
KEYWORDS    RefSeq.
SOURCE      Vidua chalybeata
  ORGANISM  Vidua chalybeata
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Passeroidea; Estrildidae; Viduinae; Vidua.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071535) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_026979565.1-RS_2023_03
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 03/03/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3512
                     /organism="Vidua chalybeata"
                     /mol_type="transcribed RNA"
                     /isolate="OUT-0048"
                     /specimen_voucher="MSB:Bird:30254"
                     /db_xref="taxon:81927"
                     /chromosome="6"
                     /sex="female"
                     /tissue_type="muscle"
                     /geo_loc_name="South Africa"
                     /lat_lon="28.04 S 26.29 E"
                     /collection_date="2011-01-16"
     gene            1..3512
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein"
                     /db_xref="GeneID:128789051"
     misc_RNA        1..3512
                     /gene="NRDE2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X3"
                     /db_xref="GeneID:128789051"
ORIGIN      
tcgggcggggggcggcggcggccgagacatggcgctgttcccggccttcgccggggccgcccagcccggggagccccccgcgggcagctccgagggctccacgagagagttagactggcttagtaacccaagcttctctgcagaagatgcactctttctgcaccagcgcactgcagaagttgccaatctcattcctgaaaaattgccattaataaggacttcttcaagatctgagttgtcagaggagagtgatacagatgagagtctgaaacagacaagtaagaaaaggaaaaagaagaagaaaaagcatcaccacagtaagaagacaaaaaagaaaaccaaaggggattccagtagcagcgaatcagaggtggacactaaatacatcaaggacaaaggaagtggcaaaagtagtgaaaaggaagcagcagcaaatctaggtaagaaaacatcaaatgttaccagcagtcattctatttggcttgatgatatccaggcccccagagcagacaccttccggatagacaagaaaccagatcctgcaaactgggcctacaaatccttgtatcgtggggacatagcaaggtataaaaggaaaggagagtcctgtcttggcatagatgcaaagaaacagtgcataatttgggacagttctgcatcaaaaaggaagcaaacacggagtcaacctgagcgctactttacaaagaacaatgtgaagatgctgaacacagatgggattcttgtttgtaataaaagttctccagctgatccacctgcttttataccagtttcccaagtggaaactgatgattcttctgacacaacagaagtaaatcctcttaggatatatgattcatcaaccacagtgtggctacaaggaaaaggcaagagtgcagacaatgagtctgtaaatacacagcaaacaattcaagagcctgggataaacatgaactccattctaatgacaaaagtggaagaatataacaagaaagttagagaaaacccaagagatattaatgcttggatggaatttatttcctttcaggatgaattaatgagaggacctagcccttatgccagtaagggagagcaggaattaaggagaaaatcactcaagttaatcttggaaaagaaactggccattttagagagggcaattgaaagcaatccaagtaatgttgatctgaagcttgctaggctgaagctgtgcacagaattctgggaaccaccagctgtgatcaaagaatggcagaagctaatttttttacatcccaataatccagagatgtggaagaaataccttctattctgtcaaagtcagttcactaccttttctgtttcaaagatcaacagtctctatggaaaatgtttgacaacactggcagctgtacaggatggcagcatgttatcccatcctctgttgcctggcactgaagaagctatgctggctatatttattcagcaatgccactttctgagacaggctggccattctgagaaagcagtgtctttgtttcaggctctgattgacttcaccttctttaaacctgacagtgtaaaagatctgccaacaaggggacaggtggaattctttgaacccttttgggatagtggagaaccacgaattggagaaaaaggagcaagaggctggaaagcatggatgcaccaacaagaaaagggtggctgggttgttcttaagcctgatgatgaggatgaggaagaaatagatgaggatcaagaaataaaagataaaactcttcccaagtggcgtatttggttggatgttgaatattcccgtgaggcaaggcattggttaccttggaggccagacaaaaccaaaaaggaaactgaagaagattgtgaagatccagaaagacaggtgttatttgatgatctaggaccatctttaatccgtctttccaatccaaagcttcaacatcaactattgtactcttttctgcaattcctgggagttccatgtacaagtaaactctttccttccagtctctatattgccatggatgaaaataacatctttgacagtgtgctttatgatgataaaccactgacttctgttgatattccactttctggattcaacagtattggtcatatggatacgatgtcacgaggcagacatcagataggccactacaaagaaggagaggagttcatacagaatgtcttccatgttctgtcccagatatttacaggaaaggaaaaatctaacctggccatttgttggctacagtatgaaatatctaaggtaattcagtgtctccaagcaaaaaagaaaaagaagctaaaagcacaagggaggaagagtaaaaagttggccaagaattttcttaaagcacctgacaaccgaaacaacctttctctctggaaactctatgcctacctagagtggctgcttggtaacacagatgattccaggaaggtgtttgacacagctctttgcacagcggggacaggaggattgaagagtgctcagctctgcagcctcagcctgctgtatgctcagctggaagtggaactgctagaaagtatagaaggagctgtcatgtcacgtgctgttcatatattgaccaaattgactgaaaatggaccatatgtgccctatagtggacaagtgttacctgtgaatgtcttgaaagctcgtaaaatatatgagcatgcactgcaagattatttaagtaaaacagcagtttctgatcaggatcaggtcaatgatgctgatcagttggttaacctggttggttgttatgcactgtttcagtatttgactgttgggattgatgctgcagtattaatatatatgcaggcttcagaaaaacttgaaatttctggttcacagaaatgtgaaaatacaggagagaattttgtcattccaaattttcccactgctcttgaagctgtcacactgctgcatacaaatttactgagattccacatgaaaattagtgtttatcctttgaatcccctgcgagaggcactgacagaggctctgaaacggtatcctagcaaccagtctctttggaggtcgtacatccacatccaaaggaagtctcacagtgcgagcaaagcacgaagattttttgatagtgtcacaaggtctgctaactctttagagccatggctgtttgcaatccaagcagagcagatgagaaaaaaactcacagagaaggtccagagggcagatgttggtgaaatacattgtactattcctgaaactggattaacaaatcggattgtagctctgtttgaacatgcagttcagagtgaaaatggtacccattgtccactgctatggagaatgtatttgaactttatgtctttaggtccttctcccagttgctgtgatcaatcaaagattgtcaagagtgacctctcagtgacatctgccagctccctcaacacttgaggcttcactaggaaaaaaagaaaaaagtaaaggattgttttataaagcccttcaaaactgtccttgggcaaaggtactctatatggat
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]