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2024-03-29 19:42:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XR_006705252           12757 bp    RNA     linear   MAM 17-DEC-2021
DEFINITION  PREDICTED: Leopardus geoffroyi NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X2,
            misc_RNA.
ACCESSION   XR_006705252
VERSION     XR_006705252.1
DBLINK      BioProject: PRJNA786922
KEYWORDS    RefSeq.
SOURCE      Leopardus geoffroyi (Geoffroy's cat)
  ORGANISM  Leopardus geoffroyi
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae;
            Felinae; Leopardus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_059337) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Leopardus geoffroyi Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12757
                     /organism="Leopardus geoffroyi"
                     /mol_type="transcribed RNA"
                     /isolate="Oge1"
                     /db_xref="taxon:46844"
                     /chromosome="B3"
                     /sex="male"
                     /cell_type="Fibroblast"
                     /tissue_type="Fibroblast"
                     /dev_stage="adult"
     gene            1..12757
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 43 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:123584212"
     misc_RNA        1..12757
                     /gene="NRDE2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
                     /db_xref="GeneID:123584212"
ORIGIN      
gtccccgggtcaagccccagggagtgagagtggggaaaaaccacacttcccagagtgcaccgcaaccgcgaaggcctcactaccggcgtccgctcgccggcgccatttctggagaggggaacggcggtgcggcctgccgtcatggcgctgttcccggcctttgcaggcattggtgagacttccggtagcggcagcgccaggaaagaattagactggctgagcaacccaagcttttgtgctggagccataacctctctgagccaacaaactgaagcggccacagccctggtttctgaagggtcacctctgacaaggagccctctgaaatcagagccttcggacgaaagtgacactaacaaaaagcccaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaaaaggaagcatcaccacaagaaaaccaggagaaaacatgggcggcccagtagcagtgggtctgagccagatagtgattctgaaaaggataaagcttccagaagcattagagacagtaaaaaggaatccgagaaaccaaaccgagaagggaacgccgtcgctgatactgggcaccgctgcgtctggcttgaggacgttcaggctctcacgggggaaaccttcagaacagataagaaaccggatcctgcaaactgggagtataagtctctctaccgaggagatatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgcatatcctgggagggggctgccacagaaaagaagcgctcacacaagcacgtcgagcgctatttcacgaagaagagcgtgggactgatgaacgttgacggagtcgccgttggcggtaaaaccgaacctccctcatctgagccggtctcatttatcccagtgaagggctcggatgatgtggttcctcctgttacgacctggctgaaccctctggggatttacgatcagtccaccacgcagtggttacaaggacagggtccttcagagcaagaaccaaagcagccagactcccagacagacagagagcatgccctgctcaaggccaaggtggaggagtttaacaggagagttcgggagaatccccgggatattcagctgtggatggcatttgttgcttttcaggacgaggtcatgaagagccctggcctgtatgccatcgaggaaggagagcaggaaaagcggaagcggtctctgaggctcgttctggagaagaagctggccatcctggagcgggccatcgaaagcaaccagagcagcgtggacctgaaactcgccaagctgaagctctgctccgagttctgggagccctccgccctggccaaagagtggcagaaactgatctttctgcatcccaacgatacagccctgtggcagaaataccttttattttgccagagccagtttagcacctttacggtgtcaaaaattcacagtctgtacggcaagtgcttgagcaccttgtctgccgtgaaggacggcagcatcttatcgcaccccgccctgccgggcaccgaggacgccatgtttgctctctttcttcagcagtgccacttcctgcggcaggctggtcactctgagaaggcggtctctctgttccaggccatggtcgacttcaccttcttcaaacccgacagtgtgaaagacctgcccaccaaaggacaggtggaattctttgagcccttctgggacagtggggagccccgggttggcgagaagggcgcccgaggctggagagcgtggatgcaccagcaggagcggggcggctgggtggtcatcagtccagatgatgatgatgatgagccagaagatgaggaccaggaaataagagagaagagtctgcccaggtggcagatctggcttgccaccgagcggtcccgagaccagaggcactggcggccgtggcgccctgataagaccaagaagcaaaccgaggaagactgtgaggatccagagagacaggtgctgtttgatgacattgcacagtctatgatccgtctttccagccaggatcttcagtttcagctggttgcggcctttctgcagttcctgggcgtgccttctggcctcagccctccagcctcctgcctctacctggccatggatgagaacagtatcttcgatgacgggcttcatgacgaaatgccactgacttttctcgacctttccttttccggtgtcagctgtgttggctgctcagacccactgggccgccggcgctggacccggggtcacaatcgagagggcgaggagttcatccgcaacatctttcaccttgtgatgcctttgttttcaggccgggagaggtctcagctctgcttctcttggttacggtacgagatcgagaaggtcatttggtgtctgcacactaaaaacaagaagaggctaaagtcacagggaaagaactgcaagaaactagccaaaaatctcctgaaggagccggaaaaccgcaacagtttttgtctctggaagcagtacgcacatctggagtggctgcttggcaacaccgaggacgccaggaaggtgttcgacgcggcgctcagcatggcggggggcagagacctgagggaccctgagctgtgtgagctcggcctcctctacgccgggctggaggcggagctgttgccggacccgagaggggccgccacggcgcgagccgttcacgtactgaccaggctgacggagcaggggccctgcgggccctactccgggcaggcgctggccgttcacatcttgaaagctcggaaggcgtacgaacacgcgctgcaggactgtttgggcgacggctgtgtctccgctccggctcccagcgactccttcgaccgcctgcctagcctggtgaaatgcttcatgctctttcagtacttgaccgtagggatcgatgcggccgtgcgggtgtacgagcaggtgctcgcaaaactgaagggctctgttcccccagggggctccggcccggaggacggcgcccgcgcccagggcccccacggcgcgctggaggccgtgacgctgatgcacacgagcctgctcaggttccacacgaaagtcagcctttaccccctggctcctctgcgacaggctctctccgaggcgttaaggttgtacccaggcaaccaggtgctttggcgggcatacgtgcagattcagagcaggtcccacacagccagtgagaccagaagatttttcgacgcggtcaccaggtccaccaaactcttggagccttggttgtttgcgatcgaggccgagaaaacgaggaagagactggtggaaagtgttcagagggtagatggtagagaggtccatgccacaattcccgagaccggcttgacacatcgcatcagagccctgtttgaaaatgcgttgcggagcgacaacggcagccagtgccccttactgtggaggatgtacctgaattttttggtttccttaggaaacaaagaaaggagcaaaggcgtgttctacaaagcacttcagaattgtccctgggcgaaggtgctgtacctggacgccgtggagcacttccccgaagagatgcaagaggtcctggacctgatgacggagaaggagctccgggtgcgcctgcccgtcgaggagctggcgcttctgctggaggactagaccaggagggaacgggccctgccttccgggcctctcgcctgccccgcccccaactcccccaccagagccgggatgtgcaggacggggacgcatgcgtgtgagcatgtgtcccgagacctccgcttttcaagtttcttaattcttagtaatttgggtctgggttatcagtcttttacctcttgcacattgtttggctgtgtgaaggacacagaaccatagtttacatattgtgtatgtgaatgtgtgtacgtagggaagaatcctgccaagtgaaaactaaacccgtcgtggctggcgtgcgggaggtctgttccactcctctgcccggccgtgaacgtgccccactggcatccttggtggtcctgccgtcgtggtaggaaaggtctggtttctgagcactcggacctctccctgcagctggtgaggagagcagcttttgcccttaagagccgtttaaaacttggtgttctggcctcgctcccgttttgaaagtttctcattatttgctaggctcttgatgccacctcccttctgtggaccaggagcagcacctggggccttgttagagatgcagcctccgggcccacctcagcccttctgagtcagggcctgcacttgaacaggaccccccggggacttaggtgcaccaagtgtgggggcgctgcccaaaggatccctgcggcaggggagtgtgcaggcggccatctgagaagtgcagagtggagccagcaccttcccaccaaacccacccctgcctgggggctgtgacacagaggcccagacccagaccacattcttgttttgatttgagggtatgaatggaacgaaatgtaaatatccacattcagaccactttcttctgaaaaggacacaccttgaagtcattattaaggacactgaactgggaggaaattgctctatcttccctgaggtcctgctctaagagaaaggcggacagctgctgcctctatcgtgatctctagaacggctgaagttgtatttctttggcatctcatccagagaagcccgtgtcgtggaagagaatcttgcctagaaaccagcggacactggttagggagaagggcagcggatcagggcacccgcggaaggtggctggccagccaagtggccccttgcctcgatctgccccgcttccttcacggcttcaagactgaactgttcagagagaggagaagtgccggaaatggatgaagaaagggagccacgttcctgggccacagttgccgttacactgggaaacttcgcggcaacagagcacacgtccagttcatctacctacactgaggagagagcatgcgttctggctaaatggaaatctccccatttactgcatttattgtctcgcaacacttgccaaaagtaaaacaacccacgcaacatgatgtgctaaaaccacaatctcagcactaagtttctatctggttatgaccctcaggatatttcaaatagttcaggaaaaaagaaagtgaacaaaaaggtaaagcaaagaggtaaaacggtaacacttggtgaactgaggtgatgggtatgtgggcatttactattgttgcaacttttctgaagacttcaaatttcccaaaatacaaagttggtgcaaaatttaaattgaagttaccaacaaagacactaacctagttgtacagatgccagtgatacgcagttcagtgcaggcaccggcgtgaaaaggccccacacacgccgtccctacctgaccgtggcacttacccctacctgacagaaacccaggtcctcacatacaaagcaggctggacccacactcagtgctgccgagcctcgccctaattctggtcatctgggaagaaacgttctcacgcacacacacaactaagaggtacagtccagcccaggttctcaccttgatgtcggccccagagaggtcatctttagccatgatcaagtcgtccagggtcacatcatcggccagcgtcatcctgcttgtgtggatctgaaagatgcgcctcttggtcttttcatcgggcagggggaactcaattttcctgtcaatgcggcctgcgggtataaacggtttccagtcacacccctgtggctccacccaggctccgctgtggctcgcggagcctgtctcctcacacctgcagtttcagagggaaacttcccttgtgggaagggtccaaatcttgaaaagtgaacactgctctttgtaaatatccacgtttgaattcatcctgtttaaaagaaatcctctctcctctggtaccttcagaaacacacaaactagctactgctgcttttggtgctacccgaatgcgaaattaactggagctaccataggagctatttcttcagaaaaaagaatattcattacgggaaagagaaacggtcacaacttaagactgcgatgaaaagggccacactacacctactacatcatgttcttagccattacctcagtggaacgcagctttggggaagttattctacacttcaataatgtatttgccttgacgtgtatcatttttaaatcccctgaaagtgcacttaaacacgaacacgtataaacacactcattctccgtgatgggacaaaagcaaatctgacctggtctgataagtgctggatccaaagtttctattcggtttgtggccatgataactttcacgtcaccccttgaatcaaatccatccaactggttcaacagttccaacattgttcgctggatttctctttcaccaccggaatttgaatcgtatctttgaaaaagaagagaagggatgaaaaccgaactgatctgctgaaggggaattataaaaacacctctgatgccctcaattctagcaacaaaatcagcacagcctcccagccaccacataatcttaaactgtagatgttttcgtgcctgagatggcatcattaattcagattgcatgtttggtatctgagcccccgacccaagcatgagctcctggaaagccttgtgaccatggctgtgtccccagagtgcagatgatgcctggctcagagtggaaattcaaggcatggctgcacactaatctccagatggtcacgactcccgggtggttgtcacctggcagccaggagcagagcctaaagcatccacagccacgtacagaaggagccaaggcaaacccatgtgcaggccacacaggcagtgctccgcgatcattctcagacaagagctacaaggtctttacctctaaatgacacaaagagaaaaatgtacctttttgttccaatggcatcaatttcatcaataaacacgatggatggcgcgtgttcttctgccactcgaaataactcccgaacgagtttgggcccatcacctaggtacttctgaataagttcagagccaaccactcttaggaaagtggctgaggtttggtttgctactgctttggctaataaggttttacctattttaggttagaaaaagaaagacaaagtgaaaaaaccctcaagtgctgtcttaacttgaaaaccctgtcactaccacctaaaacgggcataaaaaacgggcagatccctctgatgaaaaggcatgccaccattccagtgtcttgacattatgttctccaaggcagataagaggaaattcagaacgttctgattatttttaaccatcttcctaaagtcatcatcatagtgtcagaaaatacactttactgggttattcgaacttgcatagaatactattaacccgacacatgccaccagggtttgggatccaaactctactctgtgaaacaatcagtgatggagaaacagcccgagaaccctaggtttgacctaaggaaacactctttagcaccaggcctgcagcccctggggccacccgaggagtcgtggctgtgctggctgggcttccccgaggctcagctgagacggggccagctcccagtgaaacccacaaatgatagctcttcagacttttctcagcctctgttgtgtccttgtgaggaacttcctctctccaatctcagggaagatctcaaacatttccagtcctgccccattccttgagatttctatttcaagtcaaaaacaagagatctggcagccattttgtgaactttagggctggaagaccttggcccctttgatggtgagtgaggacaggggcacagggccaaccaggagcatcaggacacggtggcagttagagcagggctggtaaaggaccaaccttaggcccgcgggggaaggggggggaggctgccggggagtaacacagaagacttagttcaagtgggaaggaggacgaggcactaagctttactacaagatgtggccacgacatccttgtggtgagacagacagagggctgggtgtgaaggcttaaagtgcggagactcccagagagaaccgactagggctggtgaacagaagacaaaaaggacctaagtgggtggcatctttcagtccagaagtggccaaggccagctgctgtggcactgcagtagccagagggctcaccgaaccggcttcttcctcctcctgtcaggcccaccaccctgtgcttcaccccagctcctcagatcggtccccagcagtgcacatgcaccaaaggaggcctctcttccagcctcagccctgttgccagttcactcccagagcgaccgcggccttgggctagtagtcactggcctctctgaaacttgatttcctgggctgtaagaggacaggctgcagaagctccacgcctccggagctcgtctccacttgtctcccagaccctccactgtgggcagtccccagtcctctcaggatcctcctgggaatgtggtttcaattcattcaaataactgtgcttcctctggaatttacacagcgatgtactgctaagtcctggactgtacaacttactcaggtcaactagtcgcacggtgaaccaaatatatgtgtttttatcttcatctatgtattcagtattatattcattcagtaccaatggaccagagaatgaacctaacctgaacagcacagaataggttttaaatcagcggttctccaccatggttctgatgtctggccacacactccagatgcagatcgggattttcagggatgggaccaaatactggtattttttaaagctccagggtgatcctagtgtacagccaaggttgagcatcctggtttatttcctgtcttctaaagtatatttaatagactcacactaatcttgaattatgaatacttgaaaaccttatgttttacagcatataaatgagatatacaagaggagttctaagaaactgtaagtgcattcacactgagcaggcatttggggtgggggctgcctactggtgttcgttttttgttgcaattcctactactgtttttaacacattaagcctgttaagtctacaatttcaagtctaagataattcagtttctaagcatctactatacggataaatatacttttgtgtaataggtatgtttccctatttattccaaaaacgtccgaaatgccgcttagagaactttgttttaaactaaggaattgtggcatccttactcaagaattaattataacaagctaatgctgcagctcaggagatcagctgagtgcccagagagtgtcgaacacggagcatacgtacctgtgccaggtggtccatagagaatgaccccttttgggggctttatacccatctcttcataatattcaggatgagtgagaggaagctccacggattcctacagaaaacaaacactggtaaaaataaaacgctttcctactaaaattatcagatccattaactggcgtcaagaatatagctcactttcaacaaaaataagctaaaacctcactaccgttagagacactgtgggtgacttcatctagcagcaaggacacattgaagaggacctctgtcctgcctgagctgccgccccctgcctattgctcccaatttccctctaactttccagaagccagccttgagcaacatttaataagctcttcctgagcaaaagaacttcaagtgaaaatacaccctttccatttaaactacagacaggagctgggatgattttctgattgctgttacaccgacggacacgctggctagagatcgagctgtctgagaggtgccgggtggagaccggggacagctgtgcatgacctccctacagacgagacgccgtgcaggtggctggcccatagccaacctgaatgaccactgcacttcccccgactcacactgtccccacatcactggaggtttccagatggccacagctgaagttaacacagatggaaacattatatattcacacacacaataaacgctgcatataaaaaggattaagctgcagctgctgaagcaacaatcac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//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]