2024-03-29 16:10:19, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_005557115 3468 bp RNA linear VRT 05-FEB-2021 DEFINITION PREDICTED: Crotalus tigris NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X2, misc_RNA. ACCESSION XR_005557115 VERSION XR_005557115.1 DBLINK BioProject: PRJNA699292 KEYWORDS RefSeq. SOURCE Crotalus tigris (Tiger rattlesnake) ORGANISM Crotalus tigris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024096790.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Crotalus tigris Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3468 /organism="Crotalus tigris" /mol_type="transcribed RNA" /isolate="CLP2741" /isolation_source="sand" /db_xref="taxon:88082" /chromosome="Unknown" /ecotype="Arizona" /country="USA: Arizona" /lat_lon="31.38980 N 111.09225 W" /collection_date="2018-08-08" gene 1..3468 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:120309566" misc_RNA 1..3468 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X2" /db_xref="GeneID:120309566" ORIGIN
ttgcccaattgctggaggcggcaacggaagtcatcgttctggaggttttctcggcccgccgtgatggctctttttcctgcttttgccgatgctgataatgccggagatgtacaagcaagcgaaggctcgaaaagagatttgaactggctgacaaatcaaagcttctgcaatgaagatgcactgagattgcaccaaaatgttttagaaattacagactgtgttcctctgctccaaagcaatacagccaccagttttgaactcccagaagaaaatgaagccaacaaaagtttccaagattcacctaaaaaaagaaagaaaaagaaaaaacaaagagaccataagaaaaataaaaagaaaagaagaaaagaatggaccactagtgggtctgaacctgaggatgtgagagatgataaaaataatgaaaaaggaggaacagaattgaacttagaagaaaaaaacacaaatgtgctgtatccctctacttggcttgatgacgttcagggtttgacagcagaaggattcagaacagataagaagccagaccctgcaaattggcagtataagtcattatatcgaggcaacattgcaaggtataagagaagaagcaacttctgccttggccttcaatctaaggagcaacatattatttgggagagctcagcagcagaaaaaacctcttcctataagcggctggaacgctacttcacaaaagctggtcggaagctcctgaacgaggaaggtattcatgtcagcagtaaaaatcaagattcctcatctggctcagcctcctggataccaattttgcagctagacccagcagaggctccttctacaagctgggtagaaggggtttatgatctgcagaccacactgtggctacaaggaaaagggccccctgctgaacatggcttatcaaataagcaagaccctcaagagaaccccaagaatgtagactctcccctaatggcaaaggtggaagaatataactgcagagtcagagagaatcccagggatgtcaaagcatggatggatttggtttcttttcaggatgagctcatgagacatcctagttgttatgccatcagtgagggagaacgggaaatgagaaagaaatcatccaagctaatactggagaagaagctggccattttggaaagagcaatagaaaacaacccaaatgaagtggacctgaaactagcacggctaaaactttgcatagaattctgggagccgtctgctgtggtgaaggaatggcaaaagttgattttcttgcacccaaacaacccagccctgtggcagaaatacctcttattctgccaaagtcagttcagcacctttactgtctccaaaacacatggctgttacggaaaatgcctgagcacattatcagctgtgtatgatggcagtatgctatcccatcccgaactgccaggcacagaggaggccatgctagccatttttcttcaacagtgccatttccttaggcaggctggtcactcagaaaaagctgtgtccctattccaagccctgcttgactttaccttttttaaaccagataatgtcaaggacttgccaacaagaggacagagggaattctttgaacctttttgggacagtggagagcctcgaattggagaaaaaggagctaaaggttggaaggcctggatgcatcaacaagagaagggtggctgggtggtcatcaatccaccagatgaagatgaggaagatgtagaagatgaagaagaaataaaggatagatctctaccaaaatggcaaaactggcttcatattgaacgttcccgggaagcaaggcactggatgccctggcgtccagaaaaaaacaagaaacagtcatcagaagattgtgaagatccagagaggcaggtcttatttgatgaccttggaccatcattgataagactttccagccctgaacttcaatttcaactcctttcctcatttttgcaattcttaggagttccatgtagctgtagactttcgctttcttccttctatatagcaatggatgaaaataacgtatttgacaatggatataacaaccaaggaattctgacttctttggatatgcctctttttggagtcagtaatattggtcatatggactcattggtccaaggagagaagcatgtgacgcactctaaggaaggagaacaatttattcagaatcttttccatatgatgctgcccttattttcaggcaaagacaggtctaacctatgcattttttggcttcagtatgaaatcgctaaggtcaatcagtatttgaaaatgggaaagaaaaagaaactaaaattgcaaggcaagaaaagcaaaaaattagctaaaaatcttcttaaggcacctgacaacagaaataatgtttccctttggcaactatatgcttacctagagtggttacttggcaatatagaagatgctagaaaagtttttgatacatctttggggatggctggaattagtggaatccaaaacccccaattctgtcatcttagccttctttatgctaaactggaagcagaattattagtaaatctagaaggagctgtagaatcacgcgcaactcacatattgaccaaattggctgaaaggggacattatgttccttatcatggacaagtatcatcagtgaatgttttgaaagctcggaaaacatatgagcacctacttcaagattgtttaactgagaacctcacttctgatcaagaacatgctagtgattccagccatctgactggtttggttggctgctacgctcttttccagtatttaactcttgggattgactctgcaatgtcagtatactgtcaggtttctcaaaagctgaaagacgaggatcctggagacaggcttagtggtcaacatttcaccatgcctcttgaagccctctccctcatgcatgtaaacttgctcaggttccacatgaaaatcagtgtgtatcctttgagtcctcttcgtgaagtactgttggaggttttgaagagacatcccagcaaccagtctttttggaaggcatacatccagatccaaagcaagtcgcacaatgctagcaaagcccgacgtttttttgatgctgttacaagaactacacaatcactggagccttggctgtttgcaatccaaatggagcaaatgaggaaaaacctaattgaaagtgtccagagaatttatccattcacctagccctgggatggtcaggtctattggatatgccacacttgaatccagtgccgttgcacccaaggggagatgagcagtatatgagcaagcacaagagaggatggcacatgttggctctagcatatccaattgggagccgactggagatgtgtatgcaatgattcctgaaattgggttaacaaatcgaatcaaagttttatttgaacatgcaattcagactgaaaatggtgctcattgcccattgctctggaggttgtatatatgcttcat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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