2024-04-20 12:34:15, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XR_005293530 3487 bp RNA linear VRT 10-SEP-2021 DEFINITION PREDICTED: Dermochelys coriacea NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X3, misc_RNA. ACCESSION XR_005293530 VERSION XR_005293530.1 DBLINK BioProject: PRJNA655518 KEYWORDS RefSeq. SOURCE Dermochelys coriacea (leatherback sea turtle) ORGANISM Dermochelys coriacea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Dermochelyidae; Dermochelys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_050073.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Dermochelys coriacea Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3487 /organism="Dermochelys coriacea" /mol_type="transcribed RNA" /isolate="rDerCor1" /db_xref="taxon:27794" /chromosome="6" /sex="male" /tissue_type="blood" /dev_stage="adult" /country="USA: Half Moon Bay, California" /lat_lon="37.46311 N 122.4293 W" /collection_date="26-Sep-2017" /collected_by="Lisa Komoroske" gene 1..3487 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 62 samples with support for all annotated introns" /db_xref="GeneID:119857126" misc_RNA 1..3487 /gene="NRDE2" /product="NRDE-2, necessary for RNA interference, domain containing, transcript variant X3" /db_xref="GeneID:119857126" ORIGIN
actacatttcccagcatgctggggcagcgagcggcgccatcttgcctcgttgggcggcccgggtctcctcgggaagccagaggggaggaagctgtggttcagcccatggctcttttcccggcctttgccggcgccgctgagcccggggagacgccagccagcggtagcgagggctccaggagagaattggactggcttagcaatccaagcttctgcacagaagatgcactgaaactgcaccagcgcactgcaaaggcttcagatcctactcctgagagatcacagtttataagcaggagtccttcaagatcagagctctcaggaggaagtgacaccaatgaagatctaaaaaaatcaactaagaaaaagaaagggaaaaagaaaaagcatcatcaccacaaaaaaagaaaaaagaaagccagagaggaatcaagtaacagtgagtcagacttggacagtgagtgtatgagggataaacctagaggaagtgacacaaaccatgaaagagaagcagcaacactgaagctagaagacataacatcaaatgttgccaccgatcgctttgtttggcttgaggatattcaggctttgacagcagaaaccttcagaaaagataataaacccgaccctgcaaactgggaatacaagtcactgtatcgaggggacatagcaagatacaagcggaaaggggactcatgccttggtattgacctaaagaaacaatgtataacttgggaaagttccatggtagaaaagaaacaatcccccaagcgacctgaacgctacttcacgaagaatagtgtgaagttattgagcacagatggaattccagtttacagtaaaagccaaacttcatctggttcaagcacttttataccagtttcacaactggacagtaatgctcctactaccacaacctgtgtgaatcctcttgggatttatgatccattgaccacactctggttgcaaggaaaaggtcccccagagcatgagactttaaagcagcaggcatcccaagagaccagtgggaatattaactctattctaatggcaaaagtggaagaatataataggatggtcagagaaaatccaagagatgttcacacttggatggaatttgtttcttttcaggatgaaataatgagaggacccagcccttatgccatcaaagagggagagcaagaaataaggagaaaatcattcaagctaatcctagaaaagaaactggccattttagagagagctattgaaagcaacccaaatgatgttgatctgaaacttgccaagctgaagctttgtacagaattctgggaaccatcaactttgatcaaagaatggcagaagctggtttttttgcatcccaataatccagtgctgtggcagaaatatctcttattttgtcaaagtcagttcagtaccttttcagtttcaaaagtccatagtttatatggaaaatgtttgagcactttggcagctgtacaggatggcagcatggtatcacatcctatactgcctggcacagaggaagctatgttagctatctttcttcagcaatgccattttcttagacaggcgggccattctgagaaagctgtgtctttgttccaagccctggttgatttcaccttctttaaacctgacagcgtaaaagatctgccaacaagaggacaggtagagttctttgaaccattttgggatagtggagagcctcggtttggagaaaaaggagcaaaaggctggaaatcatggatgcatcaacaagaaaagggaggctggattatcaccaataaacctgatgatgatgaggaagatgtagatgaagatcaagaaataaaggataaaactctgcccaaatggcaaatttggctggacattgaattttaccgtgaaacaaggcattggctgccttggcgacctgacaaaactaaaaagcagactgaagaagattgtgaagacccggagagacaggtattgtttgatgatcttggaccatctttaatcagactttctagtccagatcttcagtttcagctgctgtactcatttctgcaattcttgggaattccatgtgggtgtagtctctttccttcaaatctctatatcgcgatggatgagaacaacatctttgacactgggcagtctgaaaggccactgacttcttttgacttgctgctttctggagtcaatagtattggccatatggacacaatgaccagagggagacagcacataggacacagtaaggaaggagaggagttcatacagaatgtctttcatttaatattgccgttattttcaggaaaggaaaagtcaaacctttcagtctgttggctacaatatgaaatctcaaaggttggtcagtgtctccaagcaaaaaacaagaagaaactgaagtcacagggaaagaaaagcaaaaaactagccaagaatctccttaaggcatctgaaaaccgaaacaacctttccctctggaaactgtatgcctacttggaatggttacttggcaacacagaagatgctagaaaagtgtttgatacagctctttgcttggcaggaactgaaggaatgagaaatacccaactctgtaatctgagcctgctttatgcttcactggaagtggagctactagagagtctggaggaaactgttatgtcacgtgctgtacatatattgaccaaactggctgaaagtgggccatatgtaccttatcctgggcaagtgttatctgtgaatatcttgaaagctcggaaggcatatgagcatgcgttgcaagattatttaaatgaaagtccagtctttaattgggatcaagccagcagttctaaccaactggttagtttagttggttgttatgcacttttccagtatttgactgttgggattgatgctgctgtattagtatgtagacatatttctgaaaagcttaaaggttctgcttcacggaagtttgaaagtattggagaaaatcttggcattcataatttcccaactgctcttgaagcagtcacactcatgcacacaaatttactcaggtaccatatgaaagttagcatttaccctttaaatccactgcgagaggcactaacggaagctttgaagctgtatcctagcaaccagtctctttggaggtcatatatccagatccaaagcaagtctcacaatgctagcaaagcacgaagattttttgatagtgtcacaaggtctgctaagtccctagagccgtggctgtttgcaatccaagcagaggagatgagaaagaagcttgtcgagaatgttcagagatgttggagaaatatattcaacgattcctgaaactgggttaacaaatcggatcaaagctttatttgaacacgcaattcagagtgaaaacggtgcccattgtccgttgctgtggagaatgtatttgaattttctgttttctctagaagataaagaaaggagcaaaggattgttttataaagcccttcagaactgtccctgggcaaag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]