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2024-04-19 22:47:07, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XR_003515620            4235 bp    RNA     linear   MAM 06-AUG-2020
DEFINITION  PREDICTED: Zalophus californianus NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X2,
            misc_RNA.
ACCESSION   XR_003515620
VERSION     XR_003515620.2
DBLINK      BioProject: PRJNA602522
KEYWORDS    RefSeq.
SOURCE      Zalophus californianus (California sea lion)
  ORGANISM  Zalophus californianus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia;
            Pinnipedia; Otariidae; Zalophus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_045600.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 6, 2020 this sequence version replaced XR_003515620.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Zalophus californianus Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4235
                     /organism="Zalophus californianus"
                     /mol_type="transcribed RNA"
                     /isolate="mZalCal1"
                     /db_xref="taxon:9704"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="blood"
                     /country="USA: California"
                     /lat_lon="37.858768 N 122.484010 W"
                     /collection_date="07-Jul-2018"
                     /collected_by="Frances Gulland and Jochen Wolf"
     gene            1..4235
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:113908852"
     misc_RNA        1..4235
                     /gene="NRDE2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X2"
                     /db_xref="GeneID:113908852"
ORIGIN      
gcgaaggcctcactaccggcgtccgctcaccggcgccatttctgtcgaagggaacggcagtgcggcctgtgatcatggcgctgttcccggcctttgcgggcattggtgacgctcccaatagcggcagcgccaggaaagaattagattggctgagcaacccgagcttttgcgttggagccataacctctctgagccaacaacctgaagaggctgctgctctggtttctgaagggtcaccgctgacgaggagtcctctgaaatcagagccttcggatgaaagtgatgctaacagaaagcccaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaagaggaaacatcaccacaagaaaaccaagagaaaacgtgggcaggccagtagcagtggctccgagccagatagtgagcctgaagaggacaaaacttccagaagcactggagacggtagaaaggaatcagagaaaccaagtcaagaaggtaatgctgccgctgatattgggcatcgctttgtttggcttgaggacgttcaggctctgactggagaaaccttcagaacagataagaaaccggatccggccaactgggagtataagtctctctaccgaggagacatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgtatatcctgggagggggctgccgcaggaaagaagccttcacacaagcatgttgagcgctattttacgaagaagagcgtgggcttaatgaacgttgatggagttgctgttggcagtaaaactgaacctccctcatctgagccaatctcctttatccctgtgaagggcttggatgatgtgattcctcccgttatgacctggttgaaccctctggggatttacgatcagtccaccacgcagtggttacaagggcagggtcctccagagcaagaatcaaagcagccagactcccagacagacagagagcgtgcgctgctcaaggccaaggtggaggagttcaacaggagagtgcgggagaaccctcacgatattcagctgtggatggcgttcgttgcttttcaggacgaggtcgtgcggagccctggcctgtatgccctggaggagggggagcaggagaagcggaagaggtctgtgaagctggtgctggagaagcagctggccatcctggagcgggccattgagagcaaccagagctccgtggagctgaagctggcccggctgaagctgtgcgcggagttctgggagccctcggcgctgctcaaggagtggcagaaactgatatttgtacaccccaacagtacggccctctggcagaagtaccttttattttgccaaagccagttcagcaccttcaccgtgtccaagatccacggtctttacggcaaatgcttgagcactctgtccgcggtgcaggacggcagcatcctgtcgcaccccgccctgcccggcaccgaggaggccgtgttcgctctctttcttcagcactgtcacttcctgcggcaggccggtcactctgagaaggcgatctcgctcttccaggccatggtggacttcaccttcttcaagccagacagcgtgaaagacctgcctaccaaaggacaggtggaattctttgagcccttctgggacagcggggagccccgggctggggagaagggtgctcgaggctggagagcctggatgcaccagcaggagcgaggcggctgggtggtcatcagtccagatgatgatgatgacgaaccagaagacgaggaccaggaaataagagatacaagtctgcccaggtggcagatctggctcgccgccgagcggtcccgagaccagaggcactggcggccgtggcgccctgataagaccaagaagcaaaccgaggaagactgtgaggacccagagagacaggtgctgttcgatgacattgctcagtctctgatccagctctccagccaggatcttcagtttcagctggttgcggcctttctgcagttcctgggcgtgccttctggcctcagccccccagcctcctgcctctacctggccatggatgaggacagcatcttcgataatgggcttcatgatgaaaagccactgacttttctcaacctgtccctttccggcgtcagctgtgttggccgctcagacccactgggctgccgccgctggacccgcgggcacaatcgagagggcgaggagttcatccgcaacatctttcaccttgtgatgcctctgttttcaggccaggagaggtctcagctgtgcttctcctggctacagtacgagatggcaaaggtcatttggtgtctgcacactaaaaacaagaagaggttaaagtcgcaaggaaagaactgcaaaaaactcgccaaaaacctccttaaggagccagaaaaccgcaacaatttttgcctctggaagcagtacgcacatgtggagtggttgctcggcaacaccgaggacgccaggaaggtgttcgacgcggcgctcagcctggcggggagcggagaaccgcgggggtgcgagctctgggagctcggccgcctctacgcggggctggagctggagctggagctggagctctcgccggccgcgagaggggccgccacggcccgagccgtccacatactgaccagactgacggagaatggtccctacgcaccctactccgggccggtcttggccgttcacgttctgaaggcccggaaggcttacgaacacgcgctgcaggactgttgggggcagagctgtggctccggtccggctcccgccgacgcctctcaccgcctcaccggcccgctgcagtgcttcatgctcttccagtacttgaccgtggggatcgatgccgcggtgcggctctacgagcaggcgtgtgcgaagctgcggggctcggtctccccgggcggctgtggcccggacgagcccggctgcgcgcagagcccgggccgcggtctcgaggccgtcacgctgacgcacacgagcctgctccgcttccacgcgagagtcagcgtttgccccgtggctcctctgcggcaggtgctctcggacgccttacggtggtacccgggcaaccaggttctgtggagggcctacgtacagattcagagtcggtcccacgcggccagtaagaccagaagattcttcgatgccatcaccaggtctgccaaacccttggagccgtggctatttgcgattgaagccgagaagatgaggaagaggctggtggaaagcgttcagagggtgggtggcagagaggtccacgccacaattcctgagaccggcttgacgcatcggatcaaagccctgtttgaaaatgctttgcggagtgacagcggcagccagtgccccttactgtggagaatgtatttgaactttctggtctccttgggaaacaaagaaaggagcaaaggcgtgttctacaaagcacttcagaattgtccttgggcaaaggcgctgtacctggatgccgtggggcacttccctgaggagatgcaggaggtcctggacctgatgacggagaaggagctccgggtgcgcctgcccatggaggagttggagcttctgctcgaggactagagaccaggaggtgttcaacaggccctgccttccaggcctcgccacctgccccgccggggccaggctgcaaaggacggggcacgcgtaagacgaaattgctttctcttctctgaggccggctctcaaacaaaaccgcaacgcctctgccaacgttgtcgttctttggcacctcatccagaaaagccagtgtcgtggaacagaattttggtgcgaaacagctggaaaaggaggctggcgagtcagagcccccgaggaaggtggccggccagccagccaagtggacgcttgccgtgtctgcccggctcactccctggctcgcacacggacctgctcagaaaggagaggagtgctggaaacagatggggggaagggaagctctgacgtggttttgaacaccctggagatggatgaggtttctgaacctgagaacgagggatgccagggcagggggagggacgtcagccagggcctgtggagagtcctactaggaaccccactactcctttcctgccccagagtgctaagaacccacaggctccagaccttccaaaatgaaaagctgtttccttctgaagccagagccatactcttcaacggcagagcccactggctttaggggtcctgctttcccactagctgctgtccagctctgcc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]