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2025-06-08 22:08:45, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XR_003422692           11060 bp    RNA     linear   MAM 04-APR-2023
DEFINITION  PREDICTED: Acinonyx jubatus NRDE-2, necessary for RNA interference,
            domain containing (NRDE2), transcript variant X1, misc_RNA.
ACCESSION   XR_003422692
VERSION     XR_003422692.2
DBLINK      BioProject: PRJNA923316
KEYWORDS    RefSeq.
SOURCE      Acinonyx jubatus (cheetah)
  ORGANISM  Acinonyx jubatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae;
            Acinonychinae; Acinonyx.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_069386) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 30, 2023 this sequence version replaced XR_003422692.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_027475565.1-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/03/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11060
                     /organism="Acinonyx jubatus"
                     /mol_type="transcribed RNA"
                     /isolate="Ajub_Pintada_27869175"
                     /db_xref="taxon:32536"
                     /chromosome="B3"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /collected_by="Rui Bernardino"
     gene            1..11060
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins"
                     /db_xref="GeneID:106989364"
     misc_RNA        1..11060
                     /gene="NRDE2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
                     /db_xref="GeneID:106989364"
ORIGIN      
tcctcgccctgccaggtccccgggtcaagccccagggagtgcgagtgggaaaaaccacacttcccagagtgcaccgcaaccgcgaaggcctcactaccggcgtccgctcgccggcgccatttctggagagggggacggcggtgcggcctgccgtcatggcgctgttcccggcctttgcaggcattggtgagacttccggtagcggcaatgccaggaaagaattagactggctgagcaacccaagcttttgtgctggagccataacctctctgagccaacaaactgaaggggccacagccctggtttctgaagggtcacctctgacaaggagccctctgaaatcagagccttcggatgaaagtgacactaacaaaaagcccaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaaaaggaagcatcaccacaagaaaaccaggagaaaacatgggaggcccagtagcagtgggtctgagccagatagtgattctgaaaaggataaagcttccagaagcattagagacagtaaaaaggaatcagagaaaccaaaccgagaagggaacgccgtcgctgatactgggcaccgctgcgtctggcttgaggacgttcaggctctcacaggggaaaccttcagaacagataagaaaccggatcctgcaaactgggagtataagtctctctaccgaggagatatagcaagatacaagaggaaaggggactcctgccttggcattaaccctaagaagcagtgcatatcctgggagggggctgccacagaaaagaagcactcacacaagcatgtcgagcgctatttcacgaagaagagcgtgggactgatgaacgttgacggagtcgctgttggcggtaaaaccgaacctccctcatctgagccggtctcatttatcccagtgaagggctcggatgatgtggttcctcctgttacgacctggttgaaccctctggggatttacgatcagtccaccacacagtggttacaaggacagggtccttcagagcaagaatcaaagcggccagactcacagacagacagagagcatgccctgctcaaggccaaggtggaggagtttaacaggagagttcgggagaatcccagggatattcagctgtggatggcatttgttgcttttcaggacgaggtcataaagagccctggcctgtatgccatcgaggaaggagagcaggaaaagcggaagcggtctctgaggctcgttctggagaagaagctggccatcctggagcgggccatcgaaagcaaccagagcagcgtggacctgaaactcgccaagctgaagctctgctccgagttctgggagccctccgccctggccaaagagtggcagaaactgatctttctgcatcccaacgatacagccctgtggcagaaataccttttattttgccagagccagtttagcacctttacagtgtcaaaaattcacggtctgtacggcaagtgcttgagcaccttgtctgccgtgaaggacggcagcatcttatcgcaccccgccctgccaggcaccgaggacgccatgtttggtctctttcttcagcagtgccacttcctgcggcaggctggtcactctgagaaggcggtctctctgttccaggccatggtcgacttcaccttcttcaaacccgacagtgtgaaagacctgcccaccaaaggacaggtggaattctttgagcccttctgggacagtggggagccccgggttggcgagaagggcgcccgaggctggagagcgtggatgcaccagcaggagcggggtggctgggtggtcatcagtccagatgatgatgatgatgagccagaagatgaggaccaggaaataagagagaagagtctgcccaggtggcagatctggcttgccaccgagcggtcccgagaccagaggcactggcggccgtggcgccctgataagaccaagaagcaaaccgaggaagactgtgaggatccagagagacaggtgctgtttgatgacattgcccagtctatgatccgtctttccagccaggatcttcagtttcagctggttgcggcctttctgcagttcctgggcgtgccttctggcctcagccctccagcctcttgcctctacctggccatggatgagaacagcatcttcgatgacgggcttcatgacgaaatgccactgacttttctcaacctttcctcttctggtgtcagctgtgttggctgctcagacccactgggccgccggcgctggacccggggtcacaatcgagagggcgaggagttcatccgcaacatctttcaccttgtgatgcctttgttttcaggccgggagaggtctcagctctgcttctcttggttacggtacgagatcgagaaggtcatttggtgtctgcacactaaaaacaagaagaggctaaagtcacagggaaagaactgcaagaaactagccaaaaatctcctgaaggagccagaaaaccgcaacagtttttgcctctggaagcagtacgcacatctggagtggctgcttggcaacaccgaggacgccaggaaggtgttcgatgcggctctcagcatggcggggggcagagacctgagggaccgtgagctgtgtgagcttggcctcctctacgccggcctggaggcggagctgttgccggacccgagaggggccgccacggcacgagccattcacgtactgaccaggctgacggagcaggggccctgcgggccctactccgggcaggcgctggctgttcacatcttgaaagctcggaaggcgtacgaacacgcgctgcaggactgtttgggcgacagctgtgtgtctgctccggctcccagcaactccttcgaccgcctgactagcctggtgaaatgcttcatgctctttcagtacttgaccgtagggatcgacgcggccgtgcgggtgtacgagcaggtgctcgcaaaactgaagggctctgttcccccagggggctctgacccggaggacggtgcccgcgcccagggcccccacggtgcgctggaggccgtgatgctgatgcacacgagcctgctcaggttccacacgaaagtcagcctttaccccctggctcctctgcgacaggctctctccgaggcgttaaggttgtacccaggcaaccaggtgctttggcgggcatacgtgcagattcagagcaggtcccacacagccagtgagaccagaagatttttcgacgcggtcaccaggtctaccaaactcttggagccttggttgtttgcgatcgaggccgagaaaatgaggaagagactggtggaaagtgttcagagggtagatggtagagaggtccacgccacaattcccgagaccggcttgacacatcgcatcagagccctgtttgaaaatgcgttgcggagcgacaacggcagccagtgccccttactgtggaggatgtacctgaattttttggtttccttaggaaacaaagaaaggagcaaaggcatgttctacaaagcacttcagaattgtccctgggcaaaggtgctgtacctggacgccgtggagcacttccccgaagagatgcaagaggtcctggacctgatgacggagaaggagctccgggtgcgcctgcccgtcgaggagctggcgcttctgctggaggactagaccaggagagaacgggccctgccttccgggcctctcgcctaccccgcccccaacccccccaccggagccgggatgcacaggacggggacacgtgcgtgtgagcatgtgtcacgagacctccgcttttcaagtttcttaattcttagtaatttgggtctgggttatcagtcttttacctcttgcacattgtttggatgtgtgaaggacacaaaaccattgtttacatattgtatatgtgaatttgtgtacgtagggaagaatcctgccaagtgaaaactaaacccgtcgtggctggcgtgcgggaggtctgttccactcctctgcccggccacgaacgttccccactggcacccttggtggtcctgccgtcgtggtaagaaaggtctggtttctgagcactcggacctctccccgcagctggtgaggagagcagcttttgcccttaagagccgtttaaaacttggtgttctggcctcgctcccgttttaaaagtttctcattatttgccaggctcttgatgccacctcccttctgtggaccaggagcatcacctgggggcttgttagaggtgcagcctccagggcccacctcagcccttctgagtcagggcccgcacttgaacaggaccccctggggacttaggtgcaccaagtgtggggggcactgcccaaaggacccctgcggcaggggagtgtgcaggcggccatctgacaagtgcagagtggagccagcgccttcccaccaaacccacccctgcctgggggctgtgacacagaggcccagacccagacctgccaggccacattcttgttttgatttctgagggtatgaatggaacgaaacgtaaatatccacattcagaccactttcttctgaaaaggacacgccttgtagtcattattaaggacactgaactgggaggaaattgctctaccttccctgaggtcctgctctaagagaaacgcggacagctgctgactctatcctgatctctagaacggctgaagttgtatttctttggcatctcatccagagaagcccgtgtcgtggaagagaatcttgcctagaaaccagcggacactggttggggagaagggcggcgggtcagggcacccgaggaaggtggctggccagccaagtggacgcttgcctcgatctgccccgcttccttcgcggcttcaagactgaactgttcaagagaggggagaggtgccggaaatggatgaagaaagggagccacgttcctgggccacagctgccgttacactgggaaacttcgcggcaacagagcacacgtccagttcatctacctacactgaggagagagcatgcgttctggctaaatggaaatctccccatttactgcatttattgtctcgcaacacttgccaaaagtaaaacaacccacacaacatgatgtgataaaaccacaatctcagcactaagtttctatctggttatgaccctcaggatatttcaaatggttcagcaaaaaagaaagtgaacaaaatgataaagtaaagaggtaaaacggtaacacttggtgaactgaggtgatgggtatgtgggcatttactattgttgcaacttttctgaagacttcaaatttcccaaagctggtgcaaaatttaaaaactctctctaaattgaagttagcgacagagacactaacctagttctacagatgccaacgatacgcagttcagtgcgggcaccggcgtgaaaaggccccacacgcgccgtccctacctgaccgtggcacttaaccctacctgacagaaacccaggtcctcacatacaaagcaggctggacacacactcagtgctgccgagcctcgccctaattctggtcatctgggaagaaacgtcctcacgcgcacacacagctaagaggtacagtccagcccaggttctcaccttgatgtcggccccagagaggtcatctttagccatgatcaggtcgtccagggtcacatcatcggccagcgtcatcctgcttgtgtggatctgaaagatgcgcctcttggtcttttcatcgggcagggggaactcaattttcctgtcaatgcggcctgcgggtataaaaggtttccagtcacacccctgtggctccccccaggctccgctgtggctcgggaagcctgtctcctcacacctgcagtttcagagggaaacttcccttgtgggaagggtccaaatcttgaaaagtgaacactgctctctgtaaatatccacgtctgaattcatcccgtttaaaagaaatcctctctcctctggtaccttcagaaacacacaaactagctactgctgcttttggtgctacccgaatgcgaaattaactggagctaccataggagctatttcttcagaaaaaagaacattcgttacgggaaagagaaacggtcacaacttaagactgcgatgaaaagggccacgctacacctactgcatcatgctcttagccactacctcagtggaacgcagcttttgggaagttattctacccttcaataatgtatttgccttgatgtgtatcacttttaaatcccctgaaagtgcacttaaacacgaacacatataaacacactcattctccgtgatgggacaaaagcaaatctgacctggtctgataagtgctggatccaaagtttctattcggtttgtggccatgataactttcacgtcaccccttgaatcaaatccatccaactggttcaacagttccaacattgttcgctggatttctctttcaccaccggaatttgaatcgtatctttgaaaaagaagagaagggttgaaaaccgaagtgatctgctgaaggggaattataaaaacacctctgatgccctcaattctagcaacaaaatcagcacagcctcccaaccaccacataatcttacttaaactgtagatgttttgtgcctgagatggcatcagtaattcagattgcacgtttggtatctgagcccccgacccaaccatgagctcctggaaagccttgtgacaatggctgtgtccccagagtgcagatgatgcctggctcagaatggaaactcaaggcatggctgcacactaatctccagatggtcacaactcccgggtggttgtcacctggcaccccggagcagagcctaaagcatccacagccgcgtacagaaggagacaaggcaaacccatgtgcaggccacgcaggcagtgctccgtgatcattcccagacaagagctacaaggtctttacctctaaatgacacaaagagaaaaatgtacctttttgttccaatggcatcaatttcatcaataaacacgatggatggcgcgtgttcttctgcaactcgaaataactcccgaacgagtttgggcccatcacctaggtacttctgaataagttcagagccaaccactcttaggaaagtggctgaggtttggtttgctactgctttggctaataaggttttacctattttaggttagaaaaaaagacaaagtgaaaaaaccctcaagttctgtcttaacttgaaaaccctgtcactaccacctaaaacgggcagatccctccgatgaaaaggcatgccgccattccagtgtcttgacattatgttctccaaggcagataagaggaaattcagaacgttctgattatttttaaccatcttcctaaagtcatcatcatagtgtcagaaaatacactttactgggttattcgaacttgcatagaagttgcaagttattaacccgacgcatgccaccagggtttgagatccaaactctactctgaaacaatcagtgatggaaaaacggcctgagaaccctaggtctgacctaaggaaacactctttagcaccaggcctgcagcccccggggccacccgaggagtcgtggctgtgctggctgggcttccccgaggctcagctgagacagggccagctcccagtgaaacccacaaatgatagttcagacttttctcagtctctgttgtgtccttgtgaggaacttcctctcaccaatctcagggaagatctcaaacatttccagtcctgccccgttccttgagatttctatttcaggtcaaaaccaagagatctggcagccattgtgtgaagtttagggctggaagaccttggcccctttgatggtgagtgaggacaggggcacagggccaagcaggagcgtcaggacatggtggcagctagagcagggctggtaaaggaccaaccttaggcccgcgggggaaggggaggaggctgccggggagtaacacggaagacttagttcaagtgggaagaaggacgaggcgctaagctttactacaagatgtggccacgacatccttgtggtgagacagacagagggcttaaagtgcggagactccccgagagaaccgactagggctggtgaacagaagacaaaaaggacctttctaagtgggtggcatctttcagtccagaaacggccaaggccagctgctgtggcactgcagtagccagagggctcaccgaaccggcttcttcctcctcctgtcaggcccaccaccctgtgcttcaccccagctcctcagatcggtccccagcagtgcacatgcaccaaaggaggcctctcttccagcctcagccctgttgccagctcactcccagagcgaccgcggccttgggctagtggtcactggcctctctgatacttgatttcctgggctgtaagaggacaggctgcagaagctccatgcctctggagctcatctccacttgtctcccagtccctccactgtgggcggtccccagtcctctcaggatcctcctgggaacgtggtttccattcactcaaataactgtgcttcctctggaatttacacagcgatgtactaagtcctggactgtacaacttactcaggtcaactagtcgcacggtgaaccaaatatatgtgtgtttatcttcatccacgtatacagtattatattcattcggtaccagtggaccagagaacgaacctaatctgaacagcacagaataggttttaagtcagcggttccccaccgtggttctgatgtctggccacacactccagatgcagatcgggattttcagggtgggaccaaacactggtattttttaaagctccagggtgatcctagtgtacagccgaggttgagcatcctggtttatttcctgtcttataaagtatatttaatagactcacactaatcccgaatcatgaatacttgaaagccttatgttttacagcatgtaaatgaggtatacaagaggagttctaagaaactgtaaatgcattcacactgagcaggcatttggggtgggggctgcctactggtgttcgttttttgttgcaattcctactactgtttttaacacattaagtctgttaagtctacaatttcaagtcggagacaattcagtttctaagcatctactatacagataaatatacttttgtgtaataggtatgtttccgtatttattccaaaaacgtccaaaatgccgcttagagaactttgttttaaactaaggaattgtggcatcattactcaagaattaattataacaagctaatactgcagctcaggagatcagctgagtgcccagagagtgtcaaacacggagcatacgtacctgtgccaggtggtccatagagaatgaccccttttgggggctttatacccatctcttcataatattcaggatgagtgagaggaagctccacagattcctacagaaaacaaacactggtaaaaataaaacgctttcctactaaaattaccagatccattaaccggcgtcaagaatatagctcactttcaacaaaaataagctaaaacctcacttactactgttagagacactgtgggtgacttcctctagcagcaaggacacattgaagaggacctctgtcccgcctgagctgccgccccctgcctattgctcccaatttccctctaactttccagaagccagccttgagcaacatttaataagctcttcctgagcaaaagaacttcaagtgaaaatacaccctttccatttaaactacagacaggagctgggatgattttctgattgctgttacaccaacggacacactggctagagatcgagctgtctgagaggtgccgggtggagaccggggacagctgtgcatgacctccctacagacaagacgccgtgcaggtggctggcccacagccaacctgaatgaccactgcacttcccccgactcatactgtccccacatcactggaggtttccagatggccacagctgaagttaacacagatggaaacattatatattcacacacacaataaacgctgcatataaaaaggattaagctgcagctgctgaagcaacaatcacccaatttatttccattacctaactcggtattaacaactacaaaagagcacactggcaagctctgttactgtttgatcagtacagaaaaaacaaaatatgcaaaataactctaagcaccctaaatgaggcagcagtaagaaatctaaagtctaaaaacccagagcccgtgcctagacctaccttaatttcctggatttggttgtccaaccccccaatatcagcataggtttcctggggggccttttctactttcatcaccgtgaccaagggatccgtgtcatccatgagcacccctatgacggcatgtacctacagagaacgttaagttttactgcagggacgtgaggtttacacaatccatttacaacagtgcaatgccagtcaccagaacggcacgaataggcggatctgagaggaaggagaaagcatccctaattcggggcttcgagactggcaacttgccttgtggttgagcaggaccgaacagcctggctccagcaggtccttgtctacaaaggagagaatgctgacgtagtgttctgagcccacagacgtggacacgatggcgtgattgtcatcaatgatctcttccaatgttcctaccgacatcggggtccccctcagatcatccacctttgatctctcctcctatgtaagagtatgccacgaaggaaaagcgggttagacctaaaaagtagacaatgctgacagttttactagagttactagattttactacgtttacaaagcaggtggtgcttttaaaaggcagctaatttatgattcataagagcctgcacaggtcaactgcttgaatttcacttattcactgaattctatttaataactaaaaccgtcaatttgtaaaatcaaagttacagtaatttctcagtttacctcttgcttttcttctaaaggcttcatttgttcctgatttctaatgaattcttcctccatgagaagatagtctttaattctctctaacttcagtaattttaagcggcactgagtgtgaggtgtcactgtaattgaaaaagttttattgta
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]