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2024-03-28 21:26:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XR_003075334            3345 bp    RNA     linear   VRT 01-MAR-2022
DEFINITION  PREDICTED: Gallus gallus NRDE-2, necessary for RNA interference,
            domain containing (NRDE2), transcript variant X3, misc_RNA.
ACCESSION   XR_003075334
VERSION     XR_003075334.3
DBLINK      BioProject: PRJNA698609
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_052536.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 1, 2022 this sequence version replaced XR_003075334.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Gallus gallus Annotation Release 106
            Annotation Version          :: 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3345
                     /organism="Gallus gallus"
                     /mol_type="transcribed RNA"
                     /isolate="bGalGal1"
                     /db_xref="taxon:9031"
                     /chromosome="5"
                     /sex="female"
                     /tissue_type="blood"
                     /country="USA: Fayetteville"
                     /lat_lon="36.0822 N 94.1719 W"
                     /collection_date="20-May-2019"
                     /collected_by="Nick Anthony"
     gene            1..3345
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 ESTs, 98 long SRA reads,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 54 samples with support for
                     all annotated introns"
                     /db_xref="CGNC:8113"
                     /db_xref="GeneID:423404"
     misc_RNA        1..3345
                     /gene="NRDE2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X3"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /db_xref="GeneID:423404"
                     /db_xref="CGNC:8113"
ORIGIN      
gccgctccgcggggcacttcgggcagctactactggcgacgggctgggacatggccttgttcccggctttcgccggtgccccagagcccggggaggccccagccggcagcagcgagggctccaggaaagaattggactggcttagtaacccaagcttctctacggaagatgccctgttactgcatcagcgcactacagaagctgcaaatctcacccctgaaaaatcacctctaataagtaggagtacttcaagatcagacttatcaggggaaagtgatacagatgagagtctgaaaaagtcaagtaagaaaaggaaaaagaaaaagaaaaagcatcaccactataagacaaaaaagaaagccaagggggactccagtagcagcgaatcagacctggacacaaagtgcatcaaggacaaagctgcagcaaatctagatgataaaacatcaaatcttaccagcaaccgctctgtttggctggatgatgtccaggctttcacaacagaaactttcagaatagacaaaaaatcagaccctgcaaactgggcctacaaatccctgtatcgaggggatattgcaagatacaaaaggagaggagagtcctgtcttggcctagatacaaagaaacagtgtatagcttgggacagtccagcatcagaaaagaagcaattgcagaggcgacctgagcgttacttctcgaagagcaatgtgaagaccctgaactcagatgggattcctgtttgcaataaaagttctccatctgacccagcagcatttataccagttctccacgtggaaaccagtgatccttctgacacaacagaggtaaatcctcttgggatttatgatccatcaactacagagtggctacaaggaaaagggtacaaaggtgaagaacatgagcctgtaaatacgcagcaggcgtttcaagagcctgggataaatgttaaccccattctaatgacgaaagtggaagaacataataagaaagtcagagaaaacccaagagatattcaggcttggatgaatttcgtttcatttcaggatgaattaatgagaggacctagcccttatgccagtatgggagagcaggaagtaagaagaaaatcactgaagttaatcttggagaagaaactagctattttagagagggcaattgaaagcaatccaagtaacgttgatctgaaactcgccaggctgagtgtttgcacggaattctgggaatcaccagctgtgatcaaagaatggcagaagctaattttcatacatcccaacaatccagagctgtggaagaaatatctcctgttctgccaaagtcaattcagtaccttttctgtttcaaaaattaatagcctctatggaaaatgtttgactaccttggcagctgtacaggatggcagcatggtatcacatcctccgctgcctggcacagaagaagctatgcttgccatatttattcagcagtgccactttctgagacaagctggccattctgagaaggcggtgtcattgtttcaggctctgattgacttcaccttcttcaaacctgacagcgtaaaagatctgccaacaaagggacaggtggaattctttgaacccttttgggacagtggagaaccacgaattggagaaaaaggagcaagaggctggagagcatggatgcaccaacaagaaaagggtggctgggttgctgttgacaatcctgatgatgatgatgaagaagagatagacgaggatgaagagataaaggataaaactctccccaagtggcacatttggatggatattgaatattctcgtgaatcaagacattggttaccgtggaggccagacaaaaccaaaaatcaagcagaagaagactgtgaagatccagaaagacaggtattatttgatgatcttgggccatctttaatccagctttctaatccagacattcagcatcaattactgtactcatttttgcaattcctgggagttccatgtataagtagactctttcctcccaacctctatattgccatggatgaaaataatatctttgacaacgtgctttctgatgaaaagccactgacttctattgatacaccactttctggattcaacagtattggtcatatggacacgatgctaaggaggagacatcacataggccactgtaaagatggagaggagttcatacagaatgtttttcatgttctatcccccctgttttcaggaaaggaaaaatcaaacctgtccatttgttggttacagtatgaaatatcaaaggtagttcagtgtatccaaacaaaaaagaagaagaagctgaaagctcaagggaggaaaagtaaaaaattggccaagaatctccttaaagcacctgacaacagaaataaccttgctctctggaaactctacgcctacctggaatggctgcttggtaacactgacgatgctaggaaggtgtttgacacagccctttgcacagcagggacgggaggactgaagagcccccagctgtgcagccttagtctgctttatgctcagctggaagtggagctactgcaaagtctagaaggagctgttacctcacgtgctgttcatatattgaccaaattggctgaaagtggaccatacgcaccctacaatggacaagtgttatccgttagcgtcttgaaagctcgtaagacatacgagcatgcactgcaagactacttaaataaagcaccagtttctgatcaggacggggccagtaattctaatcagctggttaatttagttggctgttacacagtgttccagtatttgactgttggaattgatgctgcagaattagtatgtacgcaggctttggaaaagcttgaagctcctcatccacagaaatgtgagaatactgcagagacttccagcattcaacattttcccactgctcttgaggctgtcacactgctgcgtgcaaatttactcagattccacatgaaaattagcgtttatcctttgaatcctttgcgagaagcactaacagaggccctcaaacggtttcctagcaaccaggctctatggagagcatacatccagagccagaggaagtctcacagtgctagcaaggcacgaaggtttttcgatggcgtcacaaggtctactaactctttagagccatggctgtttgccatccaagcagagcagatgagaaaaaaacttactgagaatgtccagagatgttggtgaaatatattctactattcctgaaactgggttgacaaataggattatctctctatttgaacatgcgactcagagtgaaaatggtacccactgtccattgctgtggagaatgtatttaaactttctggtttcagtcggaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]