2025-04-03 19:41:12, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XR_002057560 2462 bp RNA linear VRT 26-JUL-2018 DEFINITION PREDICTED: Oreochromis niloticus uncharacterized LOC102079679 (LOC102079679), ncRNA. ACCESSION XR_002057560 VERSION XR_002057560.1 DBLINK BioProject: PRJNA354796 KEYWORDS RefSeq; includes ab initio. SOURCE Oreochromis niloticus (Nile tilapia) ORGANISM Oreochromis niloticus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_031984.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oreochromis niloticus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2462 /organism="Oreochromis niloticus" /mol_type="transcribed RNA" /isolate="F11D_XX" /db_xref="taxon:8128" /sex="female" /tissue_type="blood" /dev_stage="adult" /linkage_group="LG20" gene 1..2462 /gene="LOC102079679" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 99% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns" /db_xref="GeneID:102079679" ncRNA 1..2462 /ncRNA_class="lncRNA" /gene="LOC102079679" /product="uncharacterized LOC102079679" /db_xref="GeneID:102079679" ORIGIN
gtagtctgtatgtgaaggtgtgctgcaaaatgattatgctctcctgacaagaggctttacagacggcaacaacggcaaaagttaggatgacattacgaaaggtctcgttttgcatcgttattctcctagtcatatggaactgtcttaagtatgagggacacagagagtttctaaatggcttctttgaggagttaatgagtgcagaagaatccagcattcatctaagaaaaaaaagagaaacttcatcaaattccactgagtatgagcttcaagctgttataagcgtctcaaatctggaacaattccagtcgatactgaacaccctcagttttcctttatcgatcaacgccactggtgaaattacaagcattaatacaacaacagtgtgttcaccaaaaaaaactgcaaacataactgaataccagtgcacatgtgaggagagctttgcttggtcatataacaaatgcattaactatgaggcctgtgatgccatcgttggtgatacatgtggatgcattaatggacttccagcagatgggcaatattgccagttaaaaaccagcaacccagtgccagtggagtatgatataaactttaacttgctcttgccagtatccagtctgcccccaaatttcattgatctgttcagagactatgtgggaaatttgtcattcccccaaaccttcactcagtctttaataatagaagacttgaacttcaccacatggtgctatccaaactctaccggaggaatgcagtgtcagtgtgaggaccactttggttggtcatgtgacaagtgtggcctatacggtgcatgcagtaatgttacctcacaaacctgtgggtgcatcaaaaagcttcctcctggtggagagttctgtgaaccaatcacaagtattcctccatgtccaactccaactcctgagccagtggaaatagtcgttgacattgaaattccagtatccagtgtgctcccaaatttcaatgatgaaataagacacgctttgcaaaatttgtccttcccatatctcatcactcagtctttaataatagaggacctaaatttcaccacatggtgctatccaaactccactggaggactccagtgtcagtgtgaggaccagtttgcttggtcatgtaacaagtgtgatgagtacggcgcatgcagtaatgtcacctcccaaacctgtgattgcataaagggatttcctctgagtggggagttctgtcaaccaatcacaggcgtcgctccttgcccaacaccaactcctgcaccagtggactttgatatagaccttgaactgcacatcccagcatctagtgtgccccaaaatttcagtgttgtgctcagaaatattctgagaaatttctccttccccaaaatcatcactgggtctttaacactgaaagacttgaacttcaccacatggtgctatccaaactccactggaggacaccagtgtcagtgtgaagaccagtttgcttggtcatgtggcaagtgtgataagtacggcgcatgcagtaatgtcacctcacaaacctgtgattgcataaagggatttcctctgagtggggagttctgtcaaccaatcacaggcgtcgctccttgcccaacaccacctcctgcaccagtggactttgatatagaccttgaactgcacatcccagcatctagtgtgccccaaaatttcagtgttgtgctcagaaatattctgagaaatttctccttccccaaaatcatcactgggtctttaacactgaaagacttgaacttcaccacatggtgctatccaaactccactggaggacaccagtgtcagtgtgaagaccagtttgcttggtcatgtggcaagtgtgataagtacggcgcatgcagtaatgtcacctcacaaacctgtgattgcataaagggatttcctctgagtggggagttctgtcaaccaatcacaggcgtcgctccttgcccaacaccacctcctgcaccagtggactttgatatagaccttgaactgcacatcccagcatctagtgtgccccaaaatttcagtgttgtgctcagaaatattctgagaaatttctccttccccaaaatcatcactgggtctttaacactgaaagacttgaacttcaccacatggtgctatccaaactccactggaggacaccagtgtcagtgtgaagaccagtttgcttggtcatgtggcaagtgtgataagtacggcgcatgcagtaatgtcacctcacaaacctgtgattgcataaagggatttcctctgagtggggagttctgtcaaccaatcacaggcgtcgctccttgcccaacaccacctcctgcaccagtggactttgatatagaccttgaactgcacatcccagcatctagtgtgccccaaaatttcagtgttgtgctcagaaatattctgagaaatttctccttccccaaatcatcactgggtctttaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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