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2024-03-29 07:18:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_767934               2778 bp    mRNA    linear   PLN 13-SEP-2023
DEFINITION  Cryptococcus neoformans var. neoformans B-3501A hypothetical
            protein (CNBJ3030), partial mRNA.
ACCESSION   XM_767934
VERSION     XM_767934.1
DBLINK      BioProject: PRJNA19119
            BioSample: SAMN02953604
KEYWORDS    RefSeq.
SOURCE      Cryptococcus neoformans var. neoformans B-3501A
  ORGANISM  Cryptococcus neoformans var. neoformans B-3501A
            Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina;
            Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus;
            Cryptococcus neoformans species complex.
REFERENCE   1  (bases 1 to 2778)
  AUTHORS   Fung,E., Hyman,R.W., Rowley,D., Bruno,D., Miranda,M., Fukushima,M.,
            Wickes,B.L., Fu,J. and Davis,R.W.
  TITLE     Cryptococcus neoformans serotype D sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2778)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (13-SEP-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2778)
  AUTHORS   Fung,E., Hyman,R.W., Rowley,D., Bruno,D., Miranda,M., Fukushima,M.,
            Wickes,B.L., Fu,J. and Davis,R.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2004) Stanford Genome Technology Center, 855
            California Avenue, Palo Alto, CA 94304, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_009186).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..2778
                     /organism="Cryptococcus neoformans var. neoformans
                     B-3501A"
                     /mol_type="mRNA"
                     /strain="B-3501A"
                     /variety="neoformans"
                     /serotype="D"
                     /db_xref="taxon:283643"
                     /chromosome="10"
                     /note="lacks telomere sequence"
     gene            <1..>2778
                     /locus_tag="CNBJ3030"
                     /db_xref="GeneID:4938646"
     CDS             1..2778
                     /locus_tag="CNBJ3030"
                     /note="Match to ESTs gb|CF193627.1|CF193627,
                     gb|CF185907.1|CF185907, gb|CF193628.1|CF193628; HMMPfam
                     hit to PAZ, PAZ domain, score: 78.9, E(): 1.3e-20; HMMPfam
                     hit to Piwi, Piwi domain, score: 291.2, E(): 1.6e-84"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="XP_773027.1"
                     /db_xref="GeneID:4938646"
                     /translation="
MAPKLAPQGDVTSAFSNLSFGDLPRGMQETLDGCPPRPGYGSSGKGITVNANMFMARFRKQGLTVNHYDIEINPVIKTKEAKKPRPLLQKIWNQMVADATGPVKEALEAAAYDQQKSFYTPHTLPMEGGKLEIIVGLVEDGIVPTDDRRRFRAVIQPAENMKIDLDTIMDYCKGDTQTEQARDTMLRAVMAVNVLFRQDPAQRFTMSGAAGRKFFTDEDGTPLSNGAVLYKGFQQSFRWTSAGFPAVQIDTAYSAFVEPGMLVDVAPKVLGLAPSGGFGGRGGRGGRGGPPRGGFMGAAPGPARPIQELNPAQTKRLNDILRGAKFTVTHRKTERVFSIIKLTSQPADNIKFTLNGKDGQPDRTVSVAQYFQEQYNVRVTRPRLPCVQYGKNFIPMEFVKLEPFNSIPMMRITPDQTAEIIKDAAKPPPMRQSAIAAWRQKLNYSNLPKLKAWQVEVNTNMMAVPARVLPAPSVIYEGNKTIRANFGGWNMKGVRFTKAGKPLVSWAVISFDERCTVPDLQKFVTYFVNVLGQYNCPVQNKRPVCFQYNPNAGGPNMGIKPALQQAAKNSYMETKANPQIIFCILPKKDPSIYQAIKACAAEQLFKPVVTQCLQSLKIKSDRGIEQYCGNVAMKVHAKLGGLTHQVSHQLERTTMMVGADTGHPPAKGGALPPSIAVTVAAVNGENNRFVSGVRLQEGRVEIIQDLENMMATHIQTFEKNTGAKPLSILFFRDGVSEGQYAHCVNQELKSIKKAAAKFGNYNPKVTFVICAKRHSMRFFASSDADKDRTGNLPPGTVVDSLVTSPIIHDFYLQAHAGLQGTARPTHYVVVADENKYSADKLQGLVNVLCYSYARATRSVSLVPVAYYADIVAEKAREWIYNDDSETATVPSTASGSRVEQMSFDALRISKRFESNPEFNSVAWFM"
     misc_feature    625..774
                     /locus_tag="CNBJ3030"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    910..1203
                     /locus_tag="CNBJ3030"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1009..1011,1054..1056,1099..1101,1111..1113,
                     1165..1167,1174..1176,1180..1182)
                     /locus_tag="CNBJ3030"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1342..2637
                     /locus_tag="CNBJ3030"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1777..1779,1789..1791,1831..1842,1849..1851,
                     1879..1881,1888..1890,1900..1902,1912..1914)
                     /locus_tag="CNBJ3030"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1978..1980,1984..1986,2197..2199,2605..2607)
                     /locus_tag="CNBJ3030"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
atggctcccaagctcgcacctcagggtgatgtcacctctgcgttctccaatctttcctttggggacctccccaggggtatgcaggagactcttgacggttgccctcctcgtcctggttacggatcttccggaaaaggcatcaccgtgaacgctaacatgttcatggcccgatttaggaaacagggtctcactgtcaaccactacgacattgagatcaaccctgtcatcaagactaaggaagccaagaagcctcgacctctcctccagaagatctggaaccagatggtcgccgacgccactggtcccgtcaaggaggctcttgaggctgctgcgtacgaccagcagaagtccttctacacccctcacacccttcccatggagggcggcaagctcgaaatcatcgttggtcttgtcgaggacggcattgtcccgactgacgacaggcgacgattcagggccgtcatccagcctgctgagaacatgaagatcgaccttgacaccattatggactattgcaagggcgacactcaaactgagcaggcccgagacaccatgcttcgtgccgttatggcggtgaacgtccttttccgacaggaccctgctcagaggtttaccatgtccggtgctgctggccgaaagttcttcactgatgaggatggtactcccctttctaacggtgccgtcctctacaagggcttccagcagtccttcaggtggacctctgccggtttccccgccgttcaaatcgacactgcctactctgcttttgttgagcccggcatgcttgttgacgtcgctcccaaggttcttggtctcgcaccttctggcggttttggtggccgaggtggccgtggtggccgcggcggtcctcctcgaggtggctttatgggcgccgctcctggtcctgcccgaccaatccaggaattgaaccctgcgcagactaaacgtctcaacgacatcctccgaggcgccaagttcaccgtcacccatcgaaagactgagcgtgtcttctccatcatcaagttgacttcccagcctgctgacaacatcaagttcactctcaacggcaaggacggtcagcctgaccgaactgtttctgttgctcagtacttccaggagcagtacaacgtccgagttacccgacctcgtcttccttgcgtccagtacggcaagaacttcatccccatggagtttgttaagcttgagcctttcaactctatccctatgatgaggatcacccctgaccagaccgctgagattatcaaggacgctgctaagcctcctcctatgcgacagagtgctatcgccgcctggaggcagaagcttaactattctaacctccccaagcttaaggcttggcaggtcgaggtcaacaccaacatgatggctgttcccgctcgagtcctccccgctccttccgttatctacgagggtaacaagaccatcagggccaacttcggtggctggaacatgaagggtgtccgattcaccaaagccggcaagcctcttgtctcttgggccgtcatctcctttgacgagcgatgtaccgttcctgatttgcagaagtttgtcacctactttgtcaacgttttgggtcaatacaactgtcccgtccagaacaagcgacccgtttgcttccagtacaaccctaacgctggtggacccaacatgggtatcaagcccgctttgcagcaggctgccaagaactcctacatggaaactaaggccaacccccagatcatcttctgtatccttcccaagaaggatccctcaatctaccaggctatcaaggcttgtgctgccgagcaacttttcaagcctgtcgttactcagtgtctccagtctttgaagatcaagtccgaccgcggtatcgagcaatactgtggtaacgtcgccatgaaggttcacgccaagctcggtggactcacccaccaggtttctcaccagctcgagcgaaccacaatgatggtcggtgccgacaccggccaccctcccgccaagggtggtgctcttcctccttctatcgccgtcaccgtcgccgccgtcaacggtgagaacaaccgattcgtctctggtgtgcgactccaggagggccgagttgagattatccaggatcttgagaacatgatggctactcacatccaaacctttgagaagaacactggtgctaagcctctcagcatcttgttcttccgagacggtgtctctgaaggtcaatatgcccactgcgtcaaccaagagctcaagtccatcaagaaggccgctgccaaattcggcaactacaaccctaaggttacctttgttatctgtgccaagaggcactctatgcgattcttcgcctccagcgatgccgacaaggacaggaccggcaacttgccccccggaaccgtcgtcgactctttggttacctctcccatcattcacgacttttatttgcaagcccacgctggtttgcagggtactgctcgacctactcactacgttgtcgtcgccgacgagaacaagtactctgccgacaagctccagggtttggtcaacgtcctctgttattcttacgcgcgagctacccgatccgtctctcttgtgcctgtcgcttactacgccgacatcgtcgccgaaaaggcccgagagtggatctacaacgatgacagcgagaccgctaccgttccctccaccgcttctggttctcgagttgagcagatgtccttcgatgctctccgaatcagcaaacgattcgagagtaaccccgagttcaacagtgtcgcttggttcatgtaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]