LOCUS       XM_740208                969 bp    mRNA    linear   INV 28-OCT-2022
DEFINITION  Plasmodium chabaudi chabaudi protein transport protein USE1,
            putative (PCHAS_1222100), partial mRNA.
ACCESSION   XM_740208
VERSION     XM_740208.1
DBLINK      BioProject: PRJNA317457
            BioSample: SAMEA768774
KEYWORDS    RefSeq.
SOURCE      Plasmodium chabaudi chabaudi
  ORGANISM  Plasmodium chabaudi chabaudi
            Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida;
            Plasmodiidae; Plasmodium; Plasmodium (Vinckeia).
REFERENCE   1
  AUTHORS   Otto,T.D., Bohme,U., Jackson,A.P., Hunt,M., Franke-Fayard,B.,
            Hoeijmakers,W.A., Religa,A.A., Robertson,L., Sanders,M., Ogun,S.A.,
            Cunningham,D., Erhart,A., Billker,O., Khan,S.M., Stunnenberg,H.G.,
            Langhorne,J., Holder,A.A., Waters,A.P., Newbold,C.I., Pain,A.,
            Berriman,M. and Janse,C.J.
  TITLE     A comprehensive evaluation of rodent malaria parasite genomes and
            gene expression
  JOURNAL   BMC Biol. 12, 86 (2014)
   PUBMED   25359557
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 969)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (28-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2019) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_030112).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..969
                     /organism="Plasmodium chabaudi chabaudi"
                     /mol_type="mRNA"
                     /strain="AS"
                     /sub_species="chabaudi"
                     /db_xref="taxon:31271"
                     /chromosome="12"
     gene            <1..>969
                     /locus_tag="PCHAS_1222100"
                     /old_locus_tag="PCHAS_122210"
                     /db_xref="GeneID:3498423"
     CDS             1..969
                     /locus_tag="PCHAS_1222100"
                     /old_locus_tag="PCHAS_122210"
                     /note="term=annotation;date=20180503;qualifier=removed_pro
                     duct=conserved Plasmodium protein, unknown
                     function;qualifier=added_product=conserved protein,
                     unknown function;curatorName=ucb@sanger.ac.uk;
                     term=annotation;date=20181018;qualifier=removed_product=co
                     nserved protein, unknown
                     function;qualifier=added_product=protein transport protein
                     use1,
                     putative;qualifier=added_gene_name=use1;qualifier=added_li
                     terature=pmid:12853481;qualifier=added_GO:0006890;qualifie
                     r=added_GO:0005783;curatorName=ucb@sanger.ac.uk;
                     ;query 322-322;
                     ;query 299-321;
                     ;query 1-298;
                     tmhmm; query 1-323;
                     pfam_scan;Pfam:PF09753.5; E()=2.8E-8;score=33.6;query
                     29-317;description=Use1;
                     iprscan;InterPro:IPR019150 : Vesicle transport protein,
                     Use1;Pfam:PF09753; score=2.9E-8;query
                     29-317;description=Vesicle transport protein, Use1"
                     /codon_start=1
                     /product="protein transport protein USE1, putative"
                     /protein_id="XP_745301.1"
                     /db_xref="GeneID:3498423"
                     /translation="

MIEFDELFELLKEVEISCDNFNEENKEKEKIILFLNDLNSYINDISYSLKVKTNKTYKISEIDILKKIISKKERLENVIKNSNKEKKHILFKKINNIDWEDKHDDTSLSSPSLLNETATLEKNVNTSKADINQEKEEKEGDEILLSPKRDTQKKEISDDKQSSILPNSDATNNSNNVNFKKFEEVELIKDNLIKEWGSQIDEYDNLKYEFSYEYKKMEFQKKLDKRKNINTVEDDNIDDELCLLAQEMKENVLAYRQILTEDNKTLEISANKQVNNIDSILDVNKKTKRMGSNQSISFFLSLIIIVVSMLLFMFTFFVIILL"

     misc_feature    <703..939
                     /locus_tag="PCHAS_1222100"
                     /old_locus_tag="PCHAS_122210"
                     /note="Membrane fusion protein Use1; Region: Use1;
                     pfam09753"
                     /db_xref="CDD:462882"
ORIGIN      

atgattgagtttgatgaattatttgaattactaaaagaagttgaaataagttgtgataatttcaatgaggaaaataaagaaaaagaaaaaataattttattcctaaacgatttaaactcatacattaatgatatatcatattctttgaaagtcaaaacaaataaaacatataaaatatcagagatcgatatattaaaaaaaattatttcaaaaaaagagagacttgaaaatgtgataaaaaatagtaataaggaaaagaaacatattttatttaaaaaaattaataatattgattgggaagataagcatgatgatacctctttaagtagtccctcccttctcaatgagactgccacgttagaaaaaaacgtaaacacaagtaaagcagatataaaccaagagaaagaagagaaagaaggggacgaaattttactttcaccaaagcgagacacacagaaaaaggaaatttccgatgacaaacaaagtagcatattacccaatagtgatgcaacaaataatagtaacaatgtaaattttaaaaaatttgaagaagtggaattaattaaagataatctcataaaagaatggggaagtcaaattgatgaatatgataatttaaaatatgaattttcatatgaatataaaaaaatggaatttcaaaaaaagctagataaaagaaaaaatataaatacagttgaagatgataatattgatgatgaattatgtttgcttgctcaagaaatgaaagaaaatgttttagcttatagacaaattttgactgaggataataaaacattagagatatctgcaaacaaacaagtaaataatatagactcaattcttgatgtaaataaaaaaacaaaaagaatgggaagcaatcaaagtatttcttttttcttatctttaatcataattgttgtttcaatgttactttttatgtttacattttttgtgataatccttctatag

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