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Previous release (v1)
2025-12-08 10:47:53, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_640807 819 bp mRNA linear INV 29-JAN-2010
DEFINITION Dictyostelium discoideum AX4 hypothetical protein (DDB_G0269356)
mRNA, complete cds.
ACCESSION XM_640807
VERSION XM_640807.1
KEYWORDS RefSeq.
SOURCE Dictyostelium discoideum AX4
ORGANISM Dictyostelium discoideum AX4
Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia;
Dictyosteliales; Dictyosteliaceae; Dictyostelium.
REFERENCE 1 (bases 1 to 819)
AUTHORS Eichinger,L., Pachebat,J.A., Glockner,G., Rajandream,M.A.,
Sucgang,R., Berriman,M., Song,J., Olsen,R., Szafranski,K., Xu,Q.,
Tunggal,B., Kummerfeld,S., Madera,M., Konfortov,B.A., Rivero,F.,
Bankier,A.T., Lehmann,R., Hamlin,N., Davies,R., Gaudet,P., Fey,P.,
Pilcher,K., Chen,G., Saunders,D., Sodergren,E., Davis,P.,
Kerhornou,A., Nie,X., Hall,N., Anjard,C., Hemphill,L., Bason,N.,
Farbrother,P., Desany,B., Just,E., Morio,T., Rost,R., Churcher,C.,
Cooper,J., Haydock,S., van Driessche,N., Cronin,A., Goodhead,I.,
Muzny,D., Mourier,T., Pain,A., Lu,M., Harper,D., Lindsay,R.,
Hauser,H., James,K., Quiles,M., Madan Babu,M., Saito,T.,
Buchrieser,C., Wardroper,A., Felder,M., Thangavelu,M., Johnson,D.,
Knights,A., Loulseged,H., Mungall,K., Oliver,K., Price,C.,
Quail,M.A., Urushihara,H., Hernandez,J., Rabbinowitsch,E.,
Steffen,D., Sanders,M., Ma,J., Kohara,Y., Sharp,S., Simmonds,M.,
Spiegler,S., Tivey,A., Sugano,S., White,B., Walker,D., Woodward,J.,
Winckler,T., Tanaka,Y., Shaulsky,G., Schleicher,M., Weinstock,G.,
Rosenthal,A., Cox,E.C., Chisholm,R.L., Gibbs,R., Loomis,W.F.,
Platzer,M., Kay,R.R., Williams,J., Dear,P.H., Noegel,A.A.,
Barrell,B. and Kuspa,A.
TITLE The genome of the social amoeba Dictyostelium discoideum
JOURNAL Nature 435 (7038), 43-57 (2005)
PUBMED 15875012
REFERENCE 2 (bases 1 to 819)
AUTHORS Eichinger,L., Pachebat,J.A., Gloeckner,G., Rajandream,M.-A.,
Sucgang,R., Song,J., Cox,E.C., Tunggal,B., Szafranski,K.,
Konfortov,B.A., Farbrother,P., Bankier,A.T., Lehmann,R., Hamlin,N.,
Xu,Q., Davies,R., Gaudet,P., Fey,P., Pilcher,K., Chen,G.,
Saunders,D., Sodergren,E., Davis,P., Nie,X., Kerhornou,A.,
Hemphill,L., Bason,N., Berriman,M., Desany,B., Churcher,C.,
Cooper,J., van Driessche,N., Cronin,A., Goodhead,I., Muzny,D.,
Hall,N., Harper,D., Lindsay,R., Hauser,H., James,K., Quiles,M.,
Buchrieser,C., Wardroper,A., Thangavelu,M., Johnson,D., Knights,A.,
Loulseged,H., Mungall,K., Price,C., Ma,J., Quail,M., Hernandez,J.,
Rabbinowitsch,E., Steffen,D., Sanders,M., Weinstock,G., Sharp,S.,
Just,E., Shaulsky,G., Simmonds,M., Tivey,A., White,B., Walker,D.,
Woodward,J., Winckler,T., Schleicher,M., Rosenthal,A., Rivero,F.,
Chisholm,R.L., Gibbs,R., Loomis,W.F., Platzer,M., Kay,R.R.,
Williams,J., Dear,P.H., Noegel,A.A., Barrell,B. and Kuspa,A.
CONSRTM The Dictyostelium discoideum Sequencing Consortium
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2006) dictyBase, Center for Genetic Medicine,
Northwestern University, 303 E Chicago Ave, Chicago, IL 60611, USA
REFERENCE 3 (bases 1 to 819)
AUTHORS Eichinger,L., Pachebat,J.A., Gloeckner,G., Rajandream,M.-A.,
Sucgang,R., Song,J., Cox,E.C., Tunggal,B., Szafranski,K.,
Konfortov,B.A., Farbrother,P., Bankier,A.T., Lehmann,R., Hamlin,N.,
Xu,Q., Davies,R., Gaudet,P., Fey,P., Pilcher,K., Chen,G.,
Saunders,D., Sodergren,E., Davis,P., Nie,X., Kerhornou,A.,
Hemphill,L., Bason,N., Berriman,M., Desany,B., Churcher,C.,
Cooper,J., van Driessche,N., Cronin,A., Goodhead,I., Muzny,D.,
Hall,N., Harper,D., Lindsay,R., Hauser,H., James,K., Quiles,M.,
Buchrieser,C., Wardroper,A., Thangavelu,M., Johnson,D., Knights,A.,
Loulseged,H., Mungall,K., Price,C., Ma,J., Quail,M., Hernandez,J.,
Rabbinowitsch,E., Steffen,D., Sanders,M., Weinstock,G., Sharp,S.,
Just,E., Shaulsky,G., Simmonds,M., Tivey,A., White,B., Walker,D.,
Woodward,J., Winckler,T., Schleicher,M., Rosenthal,A., Rivero,F.,
Chisholm,R.L., Gibbs,R., Loomis,W.F., Platzer,M., Kay,R.R.,
Williams,J., Dear,P.H., Noegel,A.A., Barrell,B. and Kuspa,A.
CONSRTM The Dictyostelium discoideum Sequencing Consortium
TITLE Direct Submission
JOURNAL Submitted (08-OCT-2004) dictyBase, Center for Genetic Medicine,
Northwestern University, 303 E Chicago Ave, Chicago, IL 60611, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. This record is derived from an annotated genomic
sequence (NC_007087).
COMPLETENESS: incomplete on both ends.
FEATURES Location/Qualifiers
source 1..819
/organism="Dictyostelium discoideum AX4"
/mol_type="mRNA"
/strain="AX4"
/db_xref="taxon:352472"
/chromosome="1"
/note="terminal gaps represent complex repetitive
elements"
gene <1..>819
/locus_tag="DDB_G0269356"
/old_locus_tag="DDB_0190198"
/old_locus_tag="DDBDRAFT_0190198"
/db_xref="dictyBase:DDB_G0269356"
/db_xref="GeneID:8616841"
CDS 1..819
/locus_tag="DDB_G0269356"
/old_locus_tag="DDB_0190198"
/old_locus_tag="DDBDRAFT_0190198"
/note="Short-chain dehydrogenase/reductase (SDR)
superfamily (EC 1.1.1.100)"
/codon_start=1
/product="hypothetical protein"
/protein_id="XP_645899.1"
/db_xref="dictyBase:DDB0190198"
/db_xref="dictyBase:DDB_G0269356"
/db_xref="GeneID:8616841"
/translation="
MFKNSIKRLFELKGKNAIVTGGTRGIGYQIALDLANKGANVFVWSRNKEVNEKAVKSLPIIHNDQKHTGIVCDLSKTNKLDETINEIKKQVSSFNNGDNKIGILVHSAGITHSELLFKKSSNDNNNYNNNYNSINDNSNEIMTTNLLSPILITQSFLKDMMRLKYGRIIFIGSVVSEMGNRGQTIYSSSKGGLNGFSKSLSKEIGQFNCTSNVISPGFIDTDMSQQYINNELINSIPLKRIGNTKDISKTALFLIESDYITGQNIRVDGGLY"
misc_feature 28..816
/locus_tag="DDB_G0269356"
/old_locus_tag="DDB_0190198"
/old_locus_tag="DDBDRAFT_0190198"
/note="NAD(P)-dependent dehydrogenase, short-chain alcohol
dehydrogenase family [Lipid transport and metabolism];
Region: FabG; COG1028"
/db_xref="CDD:440651"
ORIGIN
atgtttaaaaattctattaaaagattatttgaattaaaaggtaaaaatgcaatagtaactggtggaacaagaggtattggatatcagattgcacttgatttagccaataaaggtgcaaatgttttcgtttggagtagaaataaagaagtaaatgaaaaagcagttaaatcattaccaataatacataacgatcaaaaacatacaggtatagtatgtgatctttcaaaaaccaataaattagatgaaacaataaatgaaattaaaaaacaagtttcatcattcaataatggtgataataaaattggaattttagtacattcagctggtattacacatagtgaattattatttaaaaaatcatcaaatgataataataactataataataactataattcaataaatgataatagtaatgaaattatgacaacaaatttattatcaccaatattaataacacaatcatttttaaaagatatgatgagattaaaatatggtcgtatcatattcattggtagtgttgtctctgaaatgggtaatagaggtcaaacaatttattcaagttctaaaggtggtttaaatggtttttcaaaatcactctccaaagagattggtcaattcaattgtacttcaaatgtaatttcacctggtttcattgatactgatatgtcacaacaatatataaataatgaattaattaattcaataccattaaaaagaattggtaatacaaaggatatttcaaaaacagcattatttttaatcgaatcagactatattactggtcaaaatattcgtgttgatggtggattatattaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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