2025-08-30 01:59:23, GGRNA.v2 : RefSeq release 231 (Jul, 2025)
LOCUS XM_072136833 10868 bp mRNA linear VRT 14-MAR-2025 DEFINITION PREDICTED: Engystomops pustulosus protein argonaute-3 (LOC140118656), transcript variant X3, mRNA. ACCESSION XM_072136833 VERSION XM_072136833.1 DBLINK BioProject: PRJNA1226277 KEYWORDS RefSeq. SOURCE Engystomops pustulosus (Tungara frog) ORGANISM Engystomops pustulosus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Leptodactylidae; Leiuperinae; Engystomops. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_092412) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_040894005.1-RS_2025_03 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 03/12/2025 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..10868 /organism="Engystomops pustulosus" /mol_type="mRNA" /db_xref="taxon:76066" /chromosome="2" gene 1..10868 /gene="LOC140118656" /note="protein argonaute-3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:140118656" CDS 895..3480 /gene="LOC140118656" /codon_start=1 /product="protein argonaute-3 isoform X3" /protein_id="XP_071992934.1" /db_xref="GeneID:140118656" /translation="
MEIGTAGPVGAQPFFVVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVASTGVDLDVTLPGEGGKDRPFKVSIKFVSRISWHLLHEVLTGRSLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYDADPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIHDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 1111..1395 /gene="LOC140118656" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1423..1575 /gene="LOC140118656" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1576..1938 /gene="LOC140118656" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1732..1734,1777..1779,1819..1821,1831..1833, 1885..1887,1906..1908,1912..1914) /gene="LOC140118656" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 2071..3351 /gene="LOC140118656" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2482..2484,2494..2496,2530..2541,2548..2550, 2572..2574,2581..2583,2593..2595,2605..2607) /gene="LOC140118656" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2686..2688,2692..2694,2902..2904,3319..3321) /gene="LOC140118656" /note="active site" /db_xref="CDD:240015" ORIGIN
gtaagacccattcagtttccggaagtgacgttacggcgcgatgtgctactgtcttcctggcagtgaagcgctcggtgacgtcaggtccggcatctaggggagggggctagtggaggcagccgtcaaactcctcctcattagtgaagaaagctggaggaccaggcgctgccggcggccactgctccatcaccaagtgagccgagaataaggagggctgacggagacgtcagactatactagtggaccaacaacatccgctgacgaccaatcacaaccgggctgtcctcactccgctcaggtggtggtagggggatgccagccaatcgcaactctcctctcttcttgactcgccacttcattgccactgcttgtacggagtagaggacaggtgaagtgaactaccaatagggagagagggtacaagagcgaggagccgggggcgtgagttgaggacagccaatcggtggccagcgttttacacacagaccagctgtgacagagatgtggaccaagaggtgactcagccatctctaaggcaactgccagtaagctgctagaagtgctagtcaccacaccctctgtatccaactactgctccctcctttcacctgtcatctgaacctacaggtgtgaataagtcacagctaggtgacaactctccagggtgaagccaatcaaaagccagaattcactgtgcagccaatcagcaagtagttttcccagtgcctgtctgttggtacaggagtgccattccaagaagtgggaaacctgtcacttatcagcaaaacaagaaaccagcaacaagtgcagtgagtaaaggatcagccgcccctttacgccaacccacacactgggatcttcacatttaggacagccagacactgacctccatgaatggaaatcggaactgcaggacccgtgggggcgcagcccttttttgtggtacccagacggcctggctatggcaccatggggaagcccatcaaactgctggccaactgctttcaagtggagatcccaaagattgacgtctacctctatgaggtggacattaagcctgacaaatgtccccgcagggttaacagggaggttgttgattccatggtccagcatttcaaagtcaccatatttggtgaccgtcggccagtgtatgatggcaaaagaagcttgtacactgccaatccactgcctgtagcatctactggggtggatttggatgtaacattacctggagaaggtggaaaagatcgtcccttcaaagtttccataaaatttgtctccaggataagttggcacctcctgcatgaagtacttactgggaggtcccttccagagccattggaactggacaagccaataagcaccaaccctgtccatgctgttgatgtagtgttacggcatctgccatccatgaagtacacccctgtaggacgttccttcttctctgctccagaaggctatgaccaccctctgggagggggaagagaagtctggtttggatttcatcagtccgtcagacctgccatgtggaaaatgatgctcaatatagatgtttctgccactgccttctacaaagcacaaccagttattcagttcatgtgtgaagtgttagatattcataacattgatgaacaaccacgacctctgaccgattctcaccgggtaaaattcaccaaagagataaagggtctgaaggttgaagttactcattgtggaacaatgagacggaaataccgtgtttgtaatgtgacaaggaggcctgccagccatcagaccttccctttacagctggagaatgggcagaccgtagagagaacagtcgctcagtactttagggaaaagtataatctccagttaaagtatcctcatttgccctgtctgcaagttggacaggagcagaaacacacatacctgcctctagaagtctgtaatattgtggcaggccagcgctgcatcaagaagctgactgacaatcagacctccactatgatcaaagcaacagccaggtctgcaccagacagacaggaagagatcagccggctggtcagaagtgcaaattatgacgctgatccatttgttcaagaattccagtttaaagttcgggacgagatggctcatgtgaccgggagagtgcttccagctccaatgttgcagtatggagggcgaaatcgcacagtagccactccgagccatggggtttgggacatgcggggaaaacagtttcacactggtgtggagatcaaaatgtgggccatcgcatgctttgcaacgcagaggcagtgcagagaagaaatcttgaaaggattcactgaccagctaaggaaaatctcaaaggatgctgggatgcccatccagggtcagccatgcttctgtaaatacgcgcagggcgcggacagcgtggagccgatgttcagacacctcaaaaatacatattctgggctccaacttatcatcgttatactgccaggaaagacgccagtatatgctgaagtaaagcgagttggagacacattgctaggaatggctacacagtgtgtccaagtcaagaatgtaataaaaacatctcctcaaactctctcaaatctgtgcctaaaaatcaacgtcaaattgggagggattaataatatcttggtaccacatcaacggccatctgtgttccaacaaccagtcattttcttaggggcagatgtcactcatccacctgctggagatggcaagaaaccttcaattgctgctgttgtaggcagtatggatgcccacccaagtcgatactgtgcgactgtgcgggtacagagaccacggcaggaaattatccatgaccttgcttccatggtgagagaacttctgatccagttctacaagtccacacggtttaaaccaacacggatcatcttttatcgtgatggagtctcagaaggacagttcagacagcaggtcttatattatgagctgctagcaattagagaagcctgcattagtctggagaaggattaccagcctggaataacatacattgtggtacagaaaaggcatcatacccgattgttctgtgcagatcggactgaaagggttggcagaagtggaaatattccagctggtaccactgtggatacagatataacacatccatacgagtttgatttttacctctgcagccatgctggaatacagggtactagcaggccttctcactatcatgtcttgtgggatgataactgtttcactgctgatgaactccagctgctgacctaccagctgtgccacacgtatgtgcgatgcacgagatcagtctccatccctgcacctgcctattatgctcacctcgtggcattcagagctaggtaccatctcgtggacaaggagcatgacagtgctgaaggaagccacgtatctggtcagagcaatggtcgggacccacaagcccttgccaaggctgtgcaaattcaccaggataccttacgtaccatgtacttcgcgtgagaacaacttttgtccataaaaatacacaggtttgacttacaacctgaaggatctgacgtgggttttttgggcccggtagagtggttgacattctcctagcctcccatctctccatggcctattcttctggcttgctctgaagtgcaggcacagtgattgatgggagggctaatcctgggaatagaagatttttgaggaacacagcactattatgcaatatgaaaccagccaactgctaggtcgttgtaatggagcctccacttggatgcactgcttatttttttgtctttcttttactttccaatattttaacccttttatgcctttacctcaaatcgctctgaagcactagctgtctttgcaaaaaaaaaaaaaaagaaaaaaaagagaagcaaaacatagggatgtttgggagtatgattgcatatctgtagactctttgttagacagcatatctgtgtagtccttatgaaatatctttaagaaaccgtggctaatatctgatctacttactggtgacctcttaaccccctttggtgatatcgcagttagtaaaactcctgctgcacaggggcgatcatatagaaacagactcttttgtgcccaggtatgtttctatgtatcacctgtatctatgtgatgagttattgttgacctaaaagtgtatacatatacttgcgtgtgtggataatggatatgaagtagaaggatgttgtgcaaaacatctgtctcattattaggtcccacttttttgctttttatgttagacttatttgcataagacatatccttaaagtgaacaacattaaaccccccattcccacaaaaagtaccgtgttcctatgtctgcaggaggtcattttatatctttttgttattacagcatgttaaaaaaatatatatatttttccctttcttagatgcagtcagggaggcggggagctcgaccaaaagcagtcaggcaactcctgaccacccatagttaggaggcaggacaggggcgccagatgcatggagtggacggagcaaacatcggtcaggaggtggagttgccggactgcttggtggagcagctccacctccttgactgctttgattttcattcatgctgtaactgagaaatttgctaaaaagacctccaggtgacatacatattaaagaagatggtattgtttgtgaggttggggggagggacgggtttcaagtgatcccttgattctttctgcaacattatagttagcaagatgtaagtgggtattgcatgtacctagtgcggcggtcatgcaagtgaatggatatgtgattccactcttacaacaagactattgccatttatttcctgtagtgcagaaacacagtttgtttgggggtaggaaaagcagagcacatggccctctctgggtcctgatccagataccatgggccagtttttcattatctgttttatgcttttatgtcaatttattcttattcttgtgcaaaaaaagaaaacacctccataaaaaatcctgcatcccagtcgttgcccatttaaggggatgtctaccgttttaataaaattgaatggcctgaacatgtcatataaaatggttcatccccctatttgtatgctgcaaatgcttttccattcctacacattagggaaacctccttaataggatgtgggaataaaccctatccttagagtatacatggttgtgtgggaattgtaagcttttctagtactttttatatatatatataaatgtatttattagattaataacactaatttaattattttagaacctttctttgccaccattgtaatgtttttttgtgtgtgtctcatcagatatatgttttattttgctctcattttagtgcaataagcatcaatgaatttaaacccagcaatgccaaagaggcctgcacaaccctgctggcccctgtggttactttgggattaaaataaatgaaagccttaactatgaaatgaattgtgtccaaatagtgatgtctccccagaactattatggaaagtattgtgttcccttcagtgagtagtgcaatgctttgatgttcatgctttacatgtcagaatcacatatggaccaacgagatttgttttagtgcacagtgtcagaagtgttcatgttactttactatgtgaaggactagtgacatgcaagaatcgatgtcatacttagcttgggtatatgtatacctaacaagttgtttggcacaatgttgcagaatagtgtgcacagcttgccattttctcaatttggtctcaatgttatcacagtagcacctgtacatacagatgtagcctgtacatgccaaaggtaatatcagtcattcaggtgtatattcggtctgtctcttatttgcacatttcttgccaaaaaatagtagaaaacctctatggtatcaattcccagtacaggaaatatatatatgaattcaattaaatgaaattcaatgaaatgcaccctgagaaagatgtgtaatattatcattcacgttggctagtcataaagtttttgagatgccaccagaagaattttaggtggagaaaggatatttggcttgtaggaatgtacatctggctggttttgtgcaccacgtatagaagtgacattaattaagcagattaaattattaatatatatgtatatttttagattttattggaaattctagctgaacccaagcaatacttattttcgtattactctaaatttaatgtgctattttaacactaaaaaaaaaagttagttggcttttagtacacatatttgtttaaattgtttgtattcctattcatttgtatttggcataggtaatgtcatataatagttatgctttttataaccaatatagtattccaaagataaaatctttatcccctatagatgtcagtaaattattaccgattattgttacattactcacacctggtacaaacctcattacgtattcattattaagcccagtatcatgcccaatatattttcatagaaagcagtcatgtataactaccatctgaataatggttaaatagacataagactgcaaccaatatgccactgccatgacgggcatgatgatcctctggtatcatcacctgtctagactattgtaaccaagaagctaccttttttcttttttgtttagttgctgcttcttattctgacaatgttcttttacaagtatccacaagggaaatactgataatccggcatctgcagttactctgcaaacatactgaaaaaaaacacatttacctttatctcctgcagccctctgcactggcttctagaggagggctgggagagcctgatgtaaagtgcctaaagtattggctcactatgaaacatatggattgaataaataaaggggaataactttgtcaatattgcacttcttatatactgatcctcagtaacatcctgcgttatactcaattcttattaaagtatgatctacttattcctatagtcaaatcttatttagttttgctatttgtggtcaactaagcataggccacacctaaaataaataaatacatttttaaaaatgcacaaaaaacctttttctttttattataatgcattgcttagttctgcactcccctataaacagggcattccccaggtaatgttgctttacaataaccagtagatctcgcaatagtgcaagccctgtgcagactgagcctcaaggtatgtagaaaggaaatacagacagtccccgggttatgtacaagatgggttctgtaggtttgttcttaagttgaatttatatgtaagtgtaactccagacacagtatattttatgtccctgtgacgtcaggattttcaaaattttgggctgtcattggaaacaggattaataataaagcttcattgctgacacctctgataactattatgctggcaattgcagcctcggggtaaagtctgtgcattgccaatttccagaggatgcagtcaaaactgcattgcaatcagctttgaggaaggtttaggtgcagttttgtcaatttaacaggagaaagatatttgtggaacaagtttcctcttgagaatctaattcacccgttcaattcatgtctttcacctgttaaattaaaagaaactgaagctaaaactacctcaaaactgattatgatgcagttataactgcaatgtgtgactgcacccttagagcttcaccagaggtcaacgtgggtagtgaggtccctttgtaactaggggtcgtctgtgggttgagagtttgggactgtctgtagtggagctgccggcagaaatcatggagcagctctagataaggattggcaataatacagaccacaacccaaggtcagtgcaggattctttgcatgtgcaaatttttacctgttaaaggggatttctggaccatcgtgaattctctggcactcggcaccctcatgcagttgtatcagttgtttggctgccctcggaagtagatacttccattaacgttgtaattgctatgttgtggtcctgcagctcagcttccattcttttgcaccaccagatacatagaaactagtgtgaagtgttagacacaaggaatgggtcatcaaaatcaagaactctgtaaactcctttaactgaataaggggaaactctgcggtcacaaaccttgtgcttcctgtgtaatagaaatgtacatgtcatgttgtaatgctgtagaattgtgtaaaagaagtaacaatcacatcctctttgcccattttaattagggctaggtaattcattagtgacctaccattatcaccatgtgtacactcctacatagtatacttaaccaacgtagaacggagtcctagatacacaattaaaaaagacaatatatcttcattgttttaaagaagcagagctgagggagaggtagggtcaatgctgggtcaatgctgcttacctcctaactatgcttctacttcagtttttttcataggcatatctgtaaacatatttttttttacataatatcattcttcacacccccaccccaagttacaaatgagattgtggagtaaaggtctgcttgacgttctggacccctgattacgactggtgaacttttggaataaatgacaatttcatctcacattacagtggcgtgtagaggccttagcagagagcgctactggctttgcattagctgttatattatagacacaataattgaccaaactgggtattgttacatacttgtatattaaccttgtattaacattaaggttaatagtaactcttgtattgttaatatagtgtgctcagtttctgtgataatgctgtagttttactggctgccctatgtaaaagcacataccattaccattgggtcaaacaattaagaaatacattttacatctgaaaatgcagcctggcctataacagggagttactttgtagtattgagttcaaaaaatcatttgcatctgcgctccaagtggtttctataaagtaatcgagtgatcttagtgtgttgcatatctgtgataaatgaggtgacgtgttctccctagacacccctagcatacctgaaggcctgttggatatccatggctagatagatcaggctctcctgtgttggcacacagtggtggacatgtatcgctcttattgcattctttttctttttcaagcagtaacaaagtttgctgcctcaagaatttaatgcagtctaccatatttatctttgtagcccagatgtttgttcaacttgtgctacttttgggctctgaaattgtcccattcttgcgcccataagtcgcaaaacagagtatgctagacccagactttcttttgggagatactatttgggactaaaaagttgcaaaagtcagactaaaccggcaacatgtatcataaagggataaaacttaagatatatttcaatgattacatagaccaacttcaggaaacttgaaaaagtggcagctggggggcatgccatggacaatcccatatgcgtttctatgcaaacgtatgcgatcatcaatcggcacccaatgttttgcatttagagaacacaagaaacggggtgttggttgccgatcacaccatctttgggttttgattccatttcatctgacagcaccctcaggtatactttattgttcttggtaagtgagttctatatgttgcgtcacaccttgcaattactttgctttttaaaacgcaattcaacagctgaggagatgggaaattacctaattacattgatgttaacatgtgtttacaaaatgcaataacacaatagggggaatttattaagactggcgttcagaaattcctcctgccggtgctacaactcccgtaagagacttgagcctcttagtaaatatgggcaatttctgctcgagtcttggctggaattccggtggagactagagtaaatgcgacaggccaggggaaagggggacacatcccgtcctaccataccccccaccggttctacgtcccaagaagcccatagtggtgttcaggttatagaaacctgaaagttgacaggaaaatttgtatgggttctctgactggtggggaagccagactaaattggggccaatgccttaacattgtgtttataaagcgtttttgtaaacacaaatgttaacggcaatgtaattgggcaaattccctctcctcagctgttggattgtgtttcaaaatgcaatgtaaatgccacgtgtgaacttgccttaatatggtgtgatattttgctatgcatggcaagaagtgttcttggtaagtaaagggcatgatctaaaaaatagattatggagagtatatagaagaagttgtatagttatttttggaagattaaaggatagattgcacaaaatgtattattattttgacctttagaatggcacaataggtatattgttgtgaaaggaatgtgtatttctgacttgtcccttcgcgttatcctggaaccagcagtcatactatgcatttaatgttgagacaattcagattcaccatttatcaccatttgagcctccgtgtgatttccatagtagaaagcaatgcattcaagtagaaccatgcaatgcagttactagctagttgtattcatttaataaaatgcagagctgaaatgcaatggcatagaatcaaagcagaacttttattttaaaagcagaccttcctgcagtgttatcccaatgctttgtgctgtgtgacaagtttggtactactaaatctgtagttggggcaatgtggcattatgtgcttacatttctttacaacagataattgatagctatttgcaaattttccatattctggagacatttgagcaagatttccgtcaattttctttacagaacggggacaaatgtaacatattggggcaaatttatcaag
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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