LOCUS       XM_071408742            2148 bp    mRNA    linear   VRT 18-FEB-2025
DEFINITION  PREDICTED: Salvelinus alpinus vimentin-related 2 (vimr2), mRNA.
ACCESSION   XM_071408742
VERSION     XM_071408742.1
DBLINK      BioProject: PRJNA1211668
KEYWORDS    RefSeq.
SOURCE      Salvelinus alpinus (Arctic char)
  ORGANISM  Salvelinus alpinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salvelinus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_092092) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_045679555.1-RS_2025_01
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 01/27/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2148
                     /organism="Salvelinus alpinus"
                     /mol_type="mRNA"
                     /db_xref="taxon:8036"
                     /chromosome="7"
     gene            1..2148
                     /gene="vimr2"
                     /note="vimentin-related 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2 long
                     SRA reads, 4 Proteins"
                     /db_xref="GeneID:139580176"
     CDS             159..1340
                     /gene="vimr2"
                     /codon_start=1
                     /product="alpha-internexin"
                     /protein_id="XP_071264843.1"
                     /db_xref="GeneID:139580176"
                     /translation="

MAMLRVSSYRRQFEEQRSRNGRSSGGCGGQYRSSAVKGRGAAAEECTCDQLDFVAAKTLNKESLVRFAKDRSIIAALNDRFVALINMARCFEEDNESLEAQICELEERMTGQQTTSTAVAVPEYSLDAVVERLRKERDQSLFDAEELRRELECLQEQYEETVQQRTLIQLEQEDVGLEVDVVTTDCLALREQVKIYEEQLARMEAQHETTVQNMVAPVDGPAAAGRGVLEFCNPDIKSAIIYIKENYSQLAETIQCECRETGVVVAGAVVAIGAGKELTVARPAGVTGVGQITDVSELKKLIAELEKELAELEKCGEELEDEIEMKREAYVEEIFELECRIEEMREQQHDMQVQMREQCDDYEELLGQKMAREIEIAAYRGLVEEEDERLCYL"

     misc_feature    387..1325
                     /gene="vimr2"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
     polyA_site      2148
                     /gene="vimr2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

tagttagtccagtcagcgggccgtgagagatccatcgcctggatgcaacattccccttcatctccatgtataaagtcctcaaactggactcactgtcatccgtttgccattatttgttattgtagccccagactgcagtacgtgtcccagtatcaaccatggccatgctgagagtgtcgtcctaccgccggcagtttgaggagcagaggagtcggaatggacggtccagcggtggctgtggagggcagtaccgctcctcagcggtcaagggcaggggtgcggctgctgaggagtgtacgtgtgaccagctggactttgtggctgccaagacgctcaataaggagagtctggtccgattcgctaaagaccgcagcatcattgccgccctaaatgatcgctttgtcgccctcatcaacatggcacgctgctttgaggaggacaatgagtctctggaggcccagatctgtgagctggaggagaggatgaccggccaacagaccacctccactgccgtagctgtccctgaatacagcctggacgccgtggtggagagactgcgcaaggagagggaccagagcctgtttgatgcggaggagctgaggagagagctggagtgtctgcaggagcagtatgaggagaccgttcagcagaggaccctcatccaactggagcaggaagacgttggcctggaagtggatgtagtgaccacagactgtctggccctgagggagcaggtgaaaatctatgaggaacaactggctcgcatggaggcacagcatgagacgacggttcagaacatggtggcccctgtagatggtccagctgcagcagggagaggagtcctggagttctgcaaccctgacatcaagtcagccatcatatatatcaaggagaactacagccagctggctgagaccatccagtgtgagtgcagggaaactggtgtggttgttgctggtgctgttgtcgccattggtgctggaaaggagctgacggtggccagacctgcgggggtcacaggcgttggccaaataacggacgtcagcgaactgaagaaactgattgcagagcttgaaaaggagcttgcagagctggagaagtgtggtgaggagctggaagatgagattgagatgaagagagaagcgtatgtggaggagatctttgagctggagtgtcgtattgaggagatgcgggagcagcagcatgacatgcaggtccagatgagggaacaatgtgatgactacgaggagctgctgggtcagaagatggcccgggaaatcgagatcgctgcctacagaggtttggtggaagaggaggatgaaaggctttgctacctgtgagaggaaccgatgcagaccagaccaaccaacctgctttcggcgatggatatcctcccatacagatttcatgcgttgccaaaacacaccagaccaaagtcagccagatcacatgaagctaaccgccacacaaccatttgagcagatgtaaaagtatcatgacagattaacgaggtctggagggcgtgccagggccattgataacaggtcactggcaggtgacccctgtcctataagaaagatggaattgtctaacattggggtggagggggatgggactggatagagtgtgtgtattcaatgtctgtgaaatttacctaagtggtctctatctgttgtggctacagtctctggagctaactcactgatatgacacacacacacacacacacacacacactgactctgcagaataatttacctcccgttaaccctcactccagcatgagcccattaaacgctcttaaccactgacctctccactgttcacagccattggacatctcttatatccaataagatagccttaaccgatcatggcaggtcaccttccatttgttttacagtcatgcgttaatgtgggttttacacagaaatgtcagtcaagtcagttacactgttcatgtatacttgcgaactggtatattagctttgcaaatggttgtcgaagttgacattctgcagctcccgtacagctggccagcagatagcttgtgtgctgtccctgacttagttgctcattctctgcccatgacacctggaggaacttagtcaagttaaaaccataacaataaaaaaacattttgcttga

//