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Previous release (v1)
2025-12-08 06:57:26, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_071258487 1992 bp mRNA linear INV 13-FEB-2025
DEFINITION PREDICTED: Haliotis cracherodii dentin sialophosphoprotein-like
(LOC139475247), mRNA.
ACCESSION XM_071258487
VERSION XM_071258487.1
DBLINK BioProject: PRJNA1220611
KEYWORDS RefSeq; includes ab initio.
SOURCE Haliotis cracherodii (black abalone)
ORGANISM Haliotis cracherodii
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda;
Vetigastropoda; Lepetellida; Haliotoidea; Haliotidae; Haliotis.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_027266286) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_022045235.1-RS_2025_02
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.3
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 02/12/2025
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
ab initio :: 100% of CDS bases
##RefSeq-Attributes-END##
FEATURES Location/Qualifiers
source 1..1992
/organism="Haliotis cracherodii"
/mol_type="mRNA"
/isolate="W230"
/db_xref="taxon:6455"
/chromosome="Unknown"
/tissue_type="Epipodial tissue"
/dev_stage="adult"
/collection_date="2020-07-20"
/collected_by="Blythe Marshman"
gene 1..1992
/gene="LOC139475247"
/note="dentin sialophosphoprotein-like; Derived by
automated computational analysis using gene prediction
method: Gnomon. Supporting evidence includes similarity
to: 8 Proteins"
/db_xref="GeneID:139475247"
CDS 1..1992
/gene="LOC139475247"
/codon_start=1
/product="dentin sialophosphoprotein-like"
/protein_id="XP_071114588.1"
/db_xref="GeneID:139475247"
/translation="
MWSPWNIHGAIGKADGDNGDGAYTCECSDKVDADNGDGAYTCECSDKVDGDNGDGAYTCECSDKVDADNGDGAYTCECSDKVDADNGDGAYTCECIAEVDGDNGDGAYTCECSDEVDGDNGDGTYTCECSDEVDGDNGDGAYTCECSDEVDGDNGDGAYTCECSDEVDGDNGDEAYTCECSDEVDGDNGDEAYTCECSDEVDADNGDGAYTCECSDEVDGDNGDEAYTCECSDEVDGDNGDEAYTCECSDEVDGDNGDEAYTCECSDEVDADNGDGAYTCECSDEVDGDNGDEAYTCECSDEVDGDNGDGTYTCECSDKVDGDNGDEAYTCECSDEVDGDNGDGAYTCECSDEVDGDNGDGAYTFQCSDKVDGDNGDGTYTCECGDEVDGDNGDGTYTFQCSDKVDGDNGDGTYTCECGDEVDADNGDEAYTCECSDEVDGDNGDGAYTCECSDKVDADNGDEAYTCECSDEVDGDNGDGAYTCECSDEVDGDNGDEAYTCEYSDEVDGDNGDEAYTYECSDKVDGDNGDGAYTCEYSGEVDGENGDGAYTCECSDEVDGENGDGAYTCEYSDEVDGDNGDEAYTCGCIAEVDGVNGGGAYTCECSDEVDGDNGDEAYTCECSDEVDGDNGDGTYTCECSDKVDGDNGDEAYTCECRDGVVVV"
misc_feature <34..>570
/gene="LOC139475247"
/note="K+-dependent Na+/Ca+ exchanger; Region: 2A1904;
TIGR00927"
/db_xref="CDD:273344"
misc_feature <304..>879
/gene="LOC139475247"
/note="K+-dependent Na+/Ca+ exchanger; Region: 2A1904;
TIGR00927"
/db_xref="CDD:273344"
misc_feature <739..1518
/gene="LOC139475247"
/note="K+-dependent Na+/Ca+ exchanger; Region: 2A1904;
TIGR00927"
/db_xref="CDD:273344"
misc_feature <1300..>1950
/gene="LOC139475247"
/note="K+-dependent Na+/Ca+ exchanger; Region: 2A1904;
TIGR00927"
/db_xref="CDD:273344"
ORIGIN
atgtggagcccttggaatattcatggagccattgggaaagcagatggagacaacggtgatggggcttatacatgcgaatgcagtgataaggttgatgcagacaacggtgatggggcttatacatgcgaatgcagtgataaggtagatggagacaacggtgatggggcttatacatgcgaatgcagtgataaggttgatgcagacaacggtgatggggcttatacatgcgaatgcagtgataaggtagatgcagacaacggtgatggggcttatacatgcgaatgtattgctgaggtagatggagacaacggtgatggggcttatacatgcgaatgtagtgatgaggttgatggagacaacggtgatgggacttatacatgcgaatgcagtgatgaggttgatggagacaacggtgatggggcttatacatgcgaatgcagtgatgaggttgatggagacaacggtgatggggcttatacatgcgaatgcagtgatgaggtagatggagacaacggtgatgaagcttatacatgcgaatgcagtgatgaggtagatggagacaacggtgatgaagcttatacatgcgaatgcagtgatgaggttgatgcagacaacggtgatggggcttatacatgcgaatgcagtgatgaggtagatggagacaacggtgatgaagcttatacatgcgaatgcagtgatgaggtagatggagacaacggtgatgaagcttatacatgcgaatgcagtgatgaggttgatggagacaacggtgatgaagcttatacatgcgaatgcagtgatgaggttgatgcagacaacggtgatggggcttacacatgcgaatgcagtgatgaggtagatggagacaacggtgatgaagcttatacatgcgaatgtagtgatgaggttgatggagacaacggtgatgggacttatacatgcgaatgcagtgataaggttgatggagacaacggtgatgaagcttatacatgcgaatgcagtgatgaggttgatggagacaacggtgatggggcttatacatgcgaatgcagtgatgaggttgatggagacaacggtgatggggcttatacattccaatgtagtgataaggttgatggagacaacggtgacggaacttatacatgcgaatgcggtgatgaggtagatggagacaacggtgatgggacctatacattccaatgtagtgataaggttgatggagacaacggtgacggaacttatacatgcgaatgcggtgatgaggtagatgcagacaacggtgatgaagcttatacatgcgaatgtagtgatgaggttgatggagacaacggtgatggggcttatacatgcgaatgcagtgataaggtagatgcagacaacggtgatgaagcttatacatgcgaatgcagtgatgaggtagatggagacaacggtgatggggcttatacatgcgaatgcagtgatgaggttgatggagacaacggtgatgaagcttatacatgcgaatacagtgatgaggttgatggagacaacggtgatgaagcttatacatacgaatgcagtgataaggttgatggagacaacggtgatggggcttatacatgcgaatacagtggtgaggtagatggagaaaacggtgatggggcttatacatgcgaatgcagtgatgaggtagatggagaaaacggcgatggggcttatacatgcgaatacagtgatgaggttgatggagacaacggtgatgaagcttatacatgcggatgtattgctgaggtagatggagtcaacgggggtggggcttacacatgcgaatgcagtgatgaggtagatggagacaacggtgatgaagcttatacatgcgaatgtagtgatgaggttgatggagacaacggtgatgggacttatacatgcgaatgcagtgataaggttgatggagacaacggtgatgaagcttatacatgcgaatgtagagatggagttgtggtggtatga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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