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Previous release (v1)
2025-12-08 04:08:09, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_070847585 1116 bp mRNA linear VRT 11-JAN-2025
DEFINITION PREDICTED: Pempheris klunzingeri aspartate dehydrogenase domain
containing (aspdh), transcript variant X1, mRNA.
ACCESSION XM_070847585
VERSION XM_070847585.1
DBLINK BioProject: PRJNA1208050
KEYWORDS RefSeq.
SOURCE Pempheris klunzingeri
ORGANISM Pempheris klunzingeri
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
Acanthomorphata; Eupercaria; Acropomatiformes; Pempheridae;
Pempheris.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_092028) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_042242105.1-RS_2025_01
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.3
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 01/10/2025
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..1116
/organism="Pempheris klunzingeri"
/mol_type="mRNA"
/isolate="RE-2024b"
/specimen_voucher="WAM P35483.003"
/db_xref="taxon:3127111"
/chromosome="17"
/tissue_type="Whole fish"
/dev_stage="adult"
/geo_loc_name="Australia: Western Australia, New Year
Island"
/collection_date="2023-03-28"
gene 1..1116
/gene="aspdh"
/note="aspartate dehydrogenase domain containing; Derived
by automated computational analysis using gene prediction
method: Gnomon. Supporting evidence includes similarity
to: 10 Proteins"
/db_xref="GeneID:139216465"
CDS 154..990
/gene="aspdh"
/codon_start=1
/product="aspartate dehydrogenase domain-containing
protein"
/protein_id="XP_070703686.1"
/db_xref="GeneID:139216465"
/translation="
MATSSSPLRVGVVGYGHLGQYLVERILRDGSALGLTLAFVWNRNLDKLRGLFPDELILGDLSSFADRRCDVIVEVCHPQIVKEFGIHFLSHSHFMVGSPSALSDPDLNQKLRQAAQQSGRTLYVPSGALWGGQDIQRLNDSGTLKALFIRMSKHPSCFRLTGDVLSDWTEDEGRHVLFRGSVAELCPLAPNNVNTMAAAAVAAGTLGFTGVQGEIVSDTALSDYHVVEVEVTGPDGFLVHTVRRNPAKLGAVTGSATYNSFWNSLLVCKGHGGRVYLC"
misc_feature 175..894
/gene="aspdh"
/note="L-aspartate dehydrogenase, NAD(P)-dependent [Amino
acid transport and metabolism]; Region: AspD; COG1712"
/db_xref="CDD:441318"
ORIGIN
acctggtgagtagagcaataaatagtatgtgttatattggacaagaagagattgtggaggatcagataggaagtaaggtcaaaagcagacatgtatgtgtctgtattggtttgtgttgcaggtgaaaggtttgggctattctgagcacaggacatggcaaccagctcttcccccctgagggttggagttgtaggatatggacatctagggcagtatctggtggagaggatccttagagatggatctgctcttggtctaactctggctttcgtttggaacagaaatttggacaagctcagaggtttatttcctgatgaactcatacttggtgatctatcatcctttgcagacagacgatgtgatgtgatcgtagaggtttgccatccgcagatagtgaaagaatttgggattcacttcctgtctcattcccatttcatggttggctctccctctgccctctctgatcctgatctgaaccagaagctgcgtcaggcagctcagcagtctggtaggacactctatgtccccagtggtgcattatggggaggccaggacatccagaggttgaatgatagtggcaccttgaaggctttgtttataagaatgtccaagcatccatcctgtttccggctaacaggagatgtcctctctgattggacggaggacgagggcagacatgttttgttcagaggctccgtggcagagttgtgcccacttgctccaaacaatgttaacaccatggcggcggcagcagtggcagcaggaacactcggttttactggcgttcagggagagattgtgtctgacacagcgttaagtgactaccatgtggtggaagtggaggtgactgggcctgatggcttcttagtacacacagtcaggaggaatccagccaaacttggagctgtaacgggcagcgcaacgtacaactccttctggaatagtttacttgtttgcaaaggtcatggaggccgagtgtacttgtgctaaagcggatgcctgattaactacgacacagacagaagactcactgtattgtggatattgtgtggatggtgtcactggatcagtatgttactgagaaaccttgaatatttgtgttccaataaactgcaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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