2025-09-14 19:18:54, GGRNA.v2 : RefSeq release 231 (Jul, 2025)
LOCUS XM_070341946 11176 bp mRNA linear INV 12-DEC-2024 DEFINITION PREDICTED: Littorina saxatilis copper-transporting ATPase 1-like (LOC138969207), transcript variant X5, mRNA. ACCESSION XM_070341946 VERSION XM_070341946.1 DBLINK BioProject: PRJNA1148619 KEYWORDS RefSeq. SOURCE Littorina saxatilis ORGANISM Littorina saxatilis Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Caenogastropoda; Littorinimorpha; Littorinoidea; Littorinidae; Littorina. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_090250) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_037325665.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/06/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..11176 /organism="Littorina saxatilis" /mol_type="mRNA" /isolate="snail1" /isolation_source="shore boulder field crab ecotype" /db_xref="taxon:31220" /tissue_type="muscle from the foot" /dev_stage="adult" /geo_loc_name="Sweden" /collection_date="2017" /linkage_group="LG6" gene 1..11176 /gene="LOC138969207" /note="copper-transporting ATPase 1-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:138969207" CDS 339..5282 /gene="LOC138969207" /codon_start=1 /product="copper-transporting ATPase 1-like isoform X4" /protein_id="XP_070198047.1" /db_xref="GeneID:138969207" /translation="
MEREAVLRLGQLTSADDAVTIQNLLTDQKGVVDAKVQYETREARVRYRPTETNPPILLGVLEDRAFSATIMDIQQSGDAASQKVAIDVDGMTCQSCVRNIEGNISHLDGVKDIHVSLENKQALVVFDASQTSASAVAEGISNMGFDAKVALGGDSGEQTRVIRVEGMTCQSCVRTIEGTMGSKQGISSIRVSLPDNQAIVRFNPCLISARQICEQIDDMGFDASLSDDEFAEIATRNKTPGSSRQCVISIGGMTCNSCVKNIESNISDKPGVKAIKVSLADQNGVVTYDPQIVKAAEIAEMIDDMGFDAKVAQQEDESLSDDEFAQIAARKAGGNGRKSCVISIQGMTCNSCVKNIESNIGAQPGILNIKVSLTDSNGVVTYDSKVTDPAKIAEMIDDMGFDAAVAQHDFPMGDQLANLNRSSNATQTCTISIEGMTCQSCVKKIESNMGNSAGIFSIKVSLADKNCQVDFDPAVVTPAQIGRMISDMGYRAFSLGDAAGTETQTVVVSIKGMTCQSCVNTIEGKLSEHPAVKSIHVSLSDETGTIMYDPSSATPKMLAEAIDDMGFDCAVQDGLKQDRGDQGKTIAHSASAVQMSSTGAVHFNKKVDEAGEFEKCFLTIKGMTCASCVANIERNINKIEGVKSILVSLMAQRAEVKFDPAYILPSQIANAVSDIGFNAKVNEAEGLGQGTVELTITGMTCASCVHLIQSNLLKRHGLLTASVALATSSGKFTFDTEICGPRDIIDAIKDMGFEAYLMTDDDKKAARYDHRDDIKRWRTSFLLSLIFGLPAMIVMIYFMFFYKPSEEGGEDHSNTTTTRPHKKSHKPQFMIADGLSLENLLMFILATPVQFIGGRYFYVQAYKAIKHGATNMDVLVVLATTISYLYSLIVVLVAMGLHERVSPITFFETTPMLMVFISLGRWLEHIAKGKTSEALAKLLSLQPSEAVLVTVDKENTILSEKIISVELVQRGDILKVVPGGKIPIDGKVVSGQSNCDESLITGESMPVSKKEGSTVIGGSINQHGTLLTEATHVGADTTLSQIVKLVEEAQTSKAPIQNLADKIAGIFVPIVCTLSTITLLGWVIAGYVDIKLIEEDFVDNGEVSKSEMIFEKAFQYAITVLSIACPCALGLATPTAVMVGTGVGALNGILIKGGEPLETTHKVRCIVFDKTGTVTHGVPRVARVSMFVTDSVCSFVKMIAICGTAEASSEHPIASAIVKYAKETLEAAVLGKTTDFKAVPGCGLKCKASGIESLLTGLDMDGVRNRRNKQGSLVIRIDSKSSQPSDSLHQALQIDDLAGAVAPATYEVLIGNREWMNRNGLTVTEEMDEVMTEHENQGHTAVLCTVDGVIVSMLAVADTVKSEAHVAIHELKKLVPEIILLTGDNKKTARAIAKQIGIKKVFAEVLPSHKVKKIRQLQAEGHKVAMVGDGVNDSPALAQADVGIAIGTGTDVAVEAADIVLMNSNLLDVFAAIKLSRKTVERIYMNFFFACLYNLLGIPIAAGVFVPWGLSLKPWMASAAMAASSVSVVVSSLGLKLFKKPKMKDLVTQEYHESYAKEQGLQGGVKESNKKSYNVKQTAGENVDDDEIAVYCGADVDAASRSGSRQGSLLSRLSNKIKSATNTPDQLSLLNNDDDLNMNEDSLSARV"
misc_feature 345..>587 /gene="LOC138969207" /note="Cation-transporting P-type ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217" /db_xref="CDD:441819" misc_feature 594..782 /gene="LOC138969207" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(609..617,624..626) /gene="LOC138969207" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 819..1010 /gene="LOC138969207" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(837..845,852..854) /gene="LOC138969207" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1077..1268 /gene="LOC138969207" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1095..1103,1110..1112) /gene="LOC138969207" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1359..1550 /gene="LOC138969207" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1377..1385,1392..1394) /gene="LOC138969207" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1626..1814 /gene="LOC138969207" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1644..1652,1659..1661) /gene="LOC138969207" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1857..2048 /gene="LOC138969207" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1875..1883,1890..1892) /gene="LOC138969207" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 2190..2378 /gene="LOC138969207" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(2205..2213,2220..2222) /gene="LOC138969207" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 2415..2606 /gene="LOC138969207" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(2433..2441,2448..2450) /gene="LOC138969207" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 2679..4883 /gene="LOC138969207" /note="P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B; Region: P-type_ATPase_Cu-like; cd02094" /db_xref="CDD:319783" misc_feature order(3711..3713,3717..3719,4815..4817) /gene="LOC138969207" /note="putative Cu binding site [ion binding]; other site" /db_xref="CDD:319783" misc_feature order(3843..3851,4053..4055,4266..4274,4362..4364, 4482..4490,4548..4550,4557..4559,4566..4568,4623..4625, 4632..4634) /gene="LOC138969207" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:319783" polyA_site 11176 /gene="LOC138969207" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ctgcttggcggactttttcgcgaaccttctttgctgcaatgcagggactcgcgtattgatcgtcagtgactcagcagtccaccagacaaagtccgccagcggcgtgtggatcgctcactctgtggattctcgtgattggttgaaaatgtgccatcgttccttttttagtaatgaggaaaagtccgccacgtaatatgtagtccacaatttgcgttctagcccacttcgtaaagcgtccagagtgtgtgctcataacaactattacagtgcaggatctttgtgcgttcctggttcagctttccagtgattcgagcgattcagttgcatgcgaagaggagatggagagggaggcagtactgcgactaggtcagctgaccagcgctgacgatgcagtgaccatccaaaacttgttgaccgatcagaaaggcgttgtggacgccaaggtgcagtatgagacgagagaggcgcgtgtgaggtacaggcccacagagaccaaccccccgatcttgctgggtgtgctggaagaccgcgcgttctcagccaccatcatggacattcagcagtctggagacgccgcctcacagaaggtggccatcgacgttgacggcatgacctgccagtcgtgtgtgcgcaacattgagggcaacatctcacaccttgacggggtcaaggacatccacgtgtcgctggagaacaagcaggccctggtggtcttcgacgcgtcccagacgtcagccagcgccgtggcggaagggatcagtaacatgggattcgacgccaaggtggctttgggaggggactctggggaacaaacaagagtgattcgagtggagggcatgacctgccagtcctgcgtacgcaccatcgagggcaccatgggaagcaagcagggcatcagcagcattcgagtcagcttgcccgacaaccaggccatcgtacggttcaatccctgcctgatatctgcccggcagatttgtgaacagattgatgatatgggctttgatgcttctctcagtgacgatgaatttgcggaaattgcaactcggaataagacgccaggcagcagcaggcagtgtgtgatcagcattggaggaatgacgtgtaactcttgcgtgaagaacattgagtccaacatcagcgacaaaccaggggtcaaggccatcaaggtgtccttggctgaccagaacggtgtggtgacctacgaccctcagatcgtgaaggcggctgagatcgctgaaatgattgacgacatgggctttgacgctaaggtggctcagcaggaggatgagagcctgagtgacgatgagtttgcccagattgccgccaggaaggcaggagggaacggacgcaagtcttgtgtcatcagcattcagggcatgacgtgcaactcatgtgtgaagaacattgagtccaacatcggtgctcagccaggcatcctcaacatcaaagtgtccttgacagactctaatggcgtggtgacctatgacagcaaggtcacggatccagcgaagatcgctgaaatgattgatgacatggggtttgacgctgcagtggcccagcatgactttcccatgggtgaccagctggccaatctcaaccgttcgagcaacgccactcagacttgcaccatcagcatcgagggaatgacctgccagtcatgcgtgaaaaagattgaaagcaacatgggcaattcagcgggcatcttcagcatcaaagtgtctctcgctgacaagaactgtcaggtggattttgaccccgcagtggtgactcccgcccagatcgggcgaatgatttctgacatgggatacagagcgttttctcttggagacgcagcggggacagaaacacagacagtggtcgtatccatcaagggcatgacctgccagtcctgcgtcaacaccatcgagggcaaactgtcggaacacccggctgtcaagagtatccatgtgtcgctgtctgatgagacggggacaataatgtacgaccccagcagtgccacgcctaagatgctggctgaagccatcgatgacatgggattcgactgtgctgtgcaagatggcctcaaacaggacaggggagaccagggaaagacaattgctcattctgcgagtgcggttcaaatgagcagcactggcgctgtacacttcaacaaaaaagtggacgaggccggtgaattcgagaaatgcttcctcaccatcaagggcatgacctgtgcatcctgcgtcgccaacatcgagagaaacatcaataaaattgaaggcgtgaaaagtatcctggtgtccctgatggcacagagggcagaggtcaagtttgaccccgcctacatccttccctcacaaatcgccaacgcagtctccgacattggcttcaacgccaaggtcaacgaggcagagggactgggacaaggcactgtggaactaacaatcacaggcatgacgtgcgcatcatgtgttcacctgatccagagcaatttgttaaaacgccatggtcttctgacggcgtctgttgctttagccacctcttctggaaagttcacctttgacaccgagatctgcgggcccagagacatcattgacgccattaaggatatggggtttgaggcgtacctaatgacagatgatgacaagaaggccgctcgctacgatcacagggatgatatcaaacgatggagaacgtcgttcctgttgtcgctgatcttcgggctgccagccatgatagtgatgatctacttcatgtttttctacaaaccttcggaggagggaggggaggatcacagcaacaccaccaccacccgcccccacaagaagtcccacaagcctcagttcatgatcgctgatggcttgtccttggaaaatctcctcatgtttatcttggccacacctgtgcagttcatcggtggacgatacttctacgtccaagcgtacaaggcgataaaacacggagcgaccaacatggatgttctggttgtcctggcaaccaccatctcctacctgtattccttgattgtggttctggtggccatggggctgcacgagagagtttcacccatcactttctttgagaccacgcctatgttgatggtcttcatttcccttggcagatggctggaacatattgctaagggcaagaccagcgaagccctggccaagctgctatcactacagccatcagaagcggtgctggtgacggtggacaaggagaacaccatcctgtcggagaagatcatcagtgtggagctggtgcagcgcggtgacatcctcaaggtggtgccgggcggcaagatccccatcgacggcaaggtggtcagcggtcaatctaactgcgacgagtctctcatcacgggggagagcatgcctgtgtccaaaaaggaagggtccaccgtgattggtggcagtatcaaccagcacggcactctgctgacggaagcaacacacgttggggccgacaccacactctcacagattgtcaagctggtggaagaagcacagacatctaaggcccctattcagaatctggcagacaagatagctggtatctttgtgcctattgtgtgtacgctgtccactatcacgctgctgggctgggtcatcgctggatatgtggacattaaactcattgaagaagactttgtggacaacggagaagtgtcaaagagcgagatgatcttcgagaaggcgttccagtacgccatcacggtgctgagcatcgcctgtccctgtgccctcgggctggccacacccactgctgtcatggtggggacaggggtcggggcactcaacggcattctcatcaagggaggcgagccgctagaaaccacacacaaggtgcgttgcatcgtgtttgacaagactggcacagtaacacacggcgtgccccgagttgcgcgtgtgtccatgtttgtgacagactcggtgtgttctttcgtcaagatgatcgcaatctgtggcactgctgaggccagcagtgaacaccccatcgcttctgctatcgtcaagtatgccaaggagactctagaggcagcggtgctgggcaaaacgacagacttcaaggctgtgccagggtgcggcctcaagtgcaaggcgtccgggatcgaatccctgctgacggggctggacatggacggtgtgaggaaccgccgcaacaagcagggcagtttggtcatccgcatcgactccaagtccagtcagccgtccgacagtctgcaccaggccttgcagattgacgatctggcgggagcagtggcaccggcaacgtacgaagtgctgatcggaaaccgggagtggatgaatcgaaacggtctgacggtgacagaggaaatggatgaggtgatgacagagcatgagaatcagggtcatactgcagttctctgcactgttgatggtgtgattgtttccatgctggcggtagcagacacagtcaagtcggaggcccatgttgccatccatgagctgaagaagttggtgccagagattatcctcctgacgggcgacaacaagaaaacggcacgggccattgctaagcagattggaataaagaaggtgtttgcggaggtgttgccatcccacaaggtgaagaagattcgtcagctgcaggcagagggtcacaaggtggccatggttggagacggagtgaatgattcgccggccctagctcaggctgacgtcggcatcgctataggcactggcactgacgtggctgtggaggctgccgacattgttctcatgaatagcaacctcttggatgttttcgctgccattaaactgtcaagaaaaacagttgaacgcatctatatgaacttcttctttgcctgtctctacaacttacttggcatccccattgctgctggagtgtttgtaccttggggcctgtccctcaaaccctggatggcttccgctgctatggcagcctcctctgtctctgtcgtggtctcgtctctgggtctcaaattgttcaaaaagcccaagatgaaagatctggtaacacaggagtaccacgagtcc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//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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